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Conformers: ABBIImiBZICOPNSYNN
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Hepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ Bound

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011sj3_R_U100_G101NANNANT02.52 OP01
021sj3_R_G101_G102AAAAA0890.49 AA08
031sj3_R_G102_C103AAAAA00620.38 AA00
041sj3_R_C103_C104AAAAA00700.29 AA00
051sj3_R_C104_G105AAAAA00800.21 AA00
061sj3_R_G105_G106AAAAA00780.20 AA00
071sj3_R_G106_C107AAAAA00860.19 AA00
081sj3_R_C107_A108AAAAA00810.22 AA00
091sj3_R_A108_U109AAAAA00810.24 AA00
101sj3_R_U109_G110NANNANT00.74 OP29
111sj3_R_G110_G111AAAAA00650.27 AA00
121sj3_R_G111_U112AAAAA00870.15 AA00
131sj3_R_U112_C113NANNANT00.41 AA10
141sj3_R_C113_C114AAAAA08450.28 AA08
151sj3_R_C114_C115AAAAA00630.26 AA00
161sj3_R_C115_A116AAAAA00830.21 AA00
171sj3_R_A116_G117AAAAA00750.23 AA00
181sj3_R_G117_C118AAAAA00960.13 AA00
191sj3_R_C118_C119AAAAA00890.23 AA00
201sj3_R_C119_U120A-BAB05850.16 AB05
211sj3_R_U120_C121NANNANT00.81 OP13
221sj3_R_C121_C122AAwAA01370.45 AA01
231sj3_R_C122_U123NANNANT02.09 OP27
241sj3_R_U123_C124NANNANT01.23 OP31
251sj3_R_C124_G125NANNANT01.06 BA16
261sj3_R_G125_C126NANNANT01.37 OP24
271sj3_R_C126_U127NANNANT00.80 OP30
281sj3_R_U127_G128NANNANT01.20 OP31
291sj3_R_G128_G129AAAAA08900.15 AA08
301sj3_R_G129_C130AAAAA00870.16 AA00
311sj3_R_C130_G131NANNANT01.06 OP31
321sj3_R_G131_C132AAAAA00650.23 AA00
331sj3_R_C132_C133AAAAA00810.25 AA00
341sj3_R_C133_G134AAAAA00780.25 AA00
351sj3_R_G134_G135AAAAA00880.14 AA00
361sj3_R_G135_C136AAAAA00450.32 AA00
371sj3_R_C136_U137AAAAA00740.33 AA00
381sj3_R_U137_G138AAuAA12940.00 AA12
391sj3_R_G138_G139AAAAA00880.22 AA00
401sj3_R_G139_G140AAAAA00940.15 AA00
411sj3_R_G140_C141NANNANT00.70 BB12
421sj3_R_C141_A142NANNANT00.51 OP26
431sj3_R_A142_A143AAAAA00840.13 AA00
441sj3_R_A143_C144AAAAA00880.22 AA00
451sj3_R_C144_A145AAAAA00960.11 AA00
461sj3_R_A145_C146AAAAA00920.12 AA00
471sj3_R_C146_C147AAAAA00950.16 AA00
481sj3_R_C147_A148AAAAA00880.21 AA00
491sj3_R_A148_U149AAAAA00930.23 AA00
501sj3_R_U149_U150ICLIC02910.14 IC02
511sj3_R_U150_G151ZZZZZ02640.62 ZZ02
521sj3_R_G151_C152NANNANT00.79 IC02
531sj3_R_C152_A153NANNANT00.94 AA12
541sj3_R_A153_C154AAAAA00890.20 AA00
551sj3_R_C154_U155NANNANT00.56 OP21
561sj3_R_U155_C156NANNANT00.40 OP26
571sj3_R_C156_C157AAAAA00880.21 AA00
581sj3_R_C157_G158NANNANT01.54 OP11
591sj3_R_G158_G159AAAAA08770.19 AA08
601sj3_R_G159_U160AAAAA00900.13 AA00
611sj3_R_U160_G161AAAAA00930.14 AA00
621sj3_R_G161_G162AAAAA00330.26 AA00
631sj3_R_G162_U163NANNANT01.71 OP07
641sj3_R_U163_G164NANNANT01.97 OP14
651sj3_R_G164_A165NANNANT01.71 OP16
661sj3_R_A165_A166AAAAA09850.21 AA09
671sj3_R_A166_U167NANNANT00.78 IC07
681sj3_R_U167_G168AAwAA01390.28 AA01
691sj3_R_G168_G169AAAAA00950.14 AA00
701sj3_R_G169_G170AAAAA00900.15 AA00
711sj3_R_G170_A171AAAAA00920.17 AA00
721sj3_R_A171_C172AAwAA06760.27 AA06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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