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Conformers: ABBIImiBZICOPNSYNN
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Human DNA Topoisomerase I (70 Kda) In Complex With The Indolocarbazole SA315F and Covalent Complex With A 22 Base Pair DNA Duplex

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011seu_B_DA1_DA2NANNANT00.45 BB16
021seu_B_DA2_DA3BBwBB11520.52 BB11
031seu_B_DA3_DA4BBwBB16680.54 BB16
041seu_B_DA4_DA5BBwBB02780.18 BB02
051seu_B_DA5_DG6BBBBB00840.16 BB00
061seu_B_DG6_DA7BBBBB00920.25 BB00
071seu_B_DA7_DC8miBBB13790.21 BB13
081seu_B_DC8_DT9NANNANT00.36 BB13
091seu_C_TGP11_DG12B12BB04780.37 BB04
101seu_C_DG12_DA13BBBBB00880.23 BB00
111seu_C_DA13_DA14BBBBB00860.24 BB00
121seu_C_DA14_DA15BBwBB02860.20 BB02
131seu_C_DA15_DA16BBBBB00620.34 BB00
141seu_C_DA16_DA17BBBBB00530.38 BB00
151seu_C_DA17_DT18BBwBB02370.35 BB02
161seu_C_DT18_DT19BBBBB00810.24 BB00
171seu_C_DT19_DT20B12BB04850.22 BB04
181seu_C_DT20_DT21BBBBB00680.26 BB00
191seu_C_DT21_DT22BBBBB00650.24 BB00
201seu_D_DA101_DA102BBwBB16690.26 BB16
211seu_D_DA102_DA103B12BB04610.39 BB04
221seu_D_DA103_DA104BBBBB00740.24 BB00
231seu_D_DA104_DA105B12BB04830.24 BB04
241seu_D_DA105_DT106BBBBB00680.23 BB00
251seu_D_DT106_DT107BBBBB00700.28 BB00
261seu_D_DT107_DT108BBBBB00600.28 BB00
271seu_D_DT108_DT109BBwBB11820.19 BB11
281seu_D_DT109_DT110BBBBB00690.35 BB00
291seu_D_DT110_DC111BBwBB02320.47 BB02
301seu_D_DC111_DC112NANNANT00.43 BB03
311seu_D_DC112_DA113NANNANT00.70 BB02
321seu_D_DA113_DA114BBBBB00890.10 BB00
331seu_D_DA114_DG115NANNANT00.26 BA13
341seu_D_DG115_DT116BBwBB16310.59 BB16
351seu_D_DT116_DC117BBBBB00800.26 BB00
361seu_D_DC117_DT118B12BB04830.20 BB04
371seu_D_DT118_DT119BBBBB00780.23 BB00
381seu_D_DT119_DT120NANNANT00.57 BB02
391seu_D_DT120_DT121BBwBB03740.33 BB03
401seu_D_DT121_DT122BBBBB00720.28 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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