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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF AN RNA DODECAMER CONTAINING THE ESCHERICHIA COLI SHINE-DALGARNO SEQUENCE

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011sdr_A_U1_A2AAAAA00640.20 AA00
021sdr_A_A2_A3AAAAA00690.19 AA00
031sdr_A_A3_G4AAAAA00470.13 AA00
041sdr_A_G4_G5AAAAA00860.14 AA00
051sdr_A_G5_A6AAAAA00660.26 AA00
061sdr_A_A6_G7AAAAA00740.13 AA00
071sdr_A_G7_G8AAAAA00770.27 AA00
081sdr_A_G8_U9AAAAA08610.17 AA08
091sdr_A_U9_G10AAAAA00600.22 AA00
101sdr_A_G10_A11AAAAA00330.23 AA00
111sdr_A_A11_U12AAAAA04710.38 AA04
121sdr_B_A13_U14AAAAA00770.22 AA00
131sdr_B_U14_C15AAAAA00560.28 AA00
141sdr_B_C15_A16AAAAA00600.21 AA00
151sdr_B_A16_C17AAAAA00750.15 AA00
161sdr_B_C17_C18AAAAA08460.28 AA08
171sdr_B_C18_U19AAAAA00610.21 AA00
181sdr_B_U19_C20AAAAA00670.21 AA00
191sdr_B_C20_C21AAAAA00660.26 AA00
201sdr_B_C21_U22AAAAA00810.13 AA00
211sdr_B_U22_U23AAAAA04840.20 AA04
221sdr_B_U23_A24AAAAA08530.29 AA08
231sdr_C_U25_A26AAAAA08900.18 AA08
241sdr_C_A26_A27AAAAA00810.16 AA00
251sdr_C_A27_G28AAAAA00330.26 AA00
261sdr_C_G28_G29AAAAA00780.15 AA00
271sdr_C_G29_A30AAAAA04770.25 AA04
281sdr_C_A30_G31AAAAA00720.12 AA00
291sdr_C_G31_G32AAAAA00760.14 AA00
301sdr_C_G32_U33AAAAA00670.24 AA00
311sdr_C_U33_G34NANNANT00.44 AA03
321sdr_C_G34_A35AAAAA08240.34 AA08
331sdr_C_A35_U36NANNANT00.42 AB05
341sdr_D_A37_U38AAAAA04800.32 AA04
351sdr_D_U38_C39AAAAA08110.24 AA08
361sdr_D_C39_A40AAAAA00270.27 AA00
371sdr_D_A40_C41AAAAA08790.13 AA08
381sdr_D_C41_C42AAAAA00590.26 AA00
391sdr_D_C42_U43AAAAA00620.22 AA00
401sdr_D_U43_C44AAAAA00690.24 AA00
411sdr_D_C44_C45AAAAA00730.27 AA00
421sdr_D_C45_U46AAAAA00800.28 AA00
431sdr_D_U46_U47AAAAA08380.23 AA08
441sdr_D_U47_A48AAAAA04760.23 AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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