Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1sa3_C_DC1_DC2 | BBB | BB00 | 88 | 0.19 |
| 02 | 1sa3_C_DC2_DC3 | BBB | BB00 | 90 | 0.10 |
| 03 | 1sa3_C_DC3_DC4 | BBB | BB00 | 89 | 0.20 |
| 04 | 1sa3_C_DC4_DC5 | BBB | BB01 | 67 | 0.19 |
| 05 | 1sa3_C_DC5_DG6 | B-A | BA10 | 27 | 0.37 |
| 06 | 1sa3_C_DG6_DG7 | A-B | AB04 | 27 | 0.38 |
| 07 | 1sa3_C_DG7_DG8 | BBB | BB00 | 34 | 0.42 |
| 08 | 1sa3_C_DG8_DG9 | BBB | BB00 | 89 | 0.25 |
| 09 | 1sa3_D_DC12_DC13 | BBB | BB00 | 70 | 0.17 |
| 10 | 1sa3_D_DC13_DC14 | BBB | BB00 | 93 | 0.20 |
| 11 | 1sa3_D_DC14_DC15 | BBw | BB02 | 53 | 0.32 |
| 12 | 1sa3_D_DC15_DG16 | BBB | BB00 | 42 | 0.38 |
| 13 | 1sa3_D_DG16_DG17 | BBB | BB00 | 62 | 0.35 |
| 14 | 1sa3_D_DG17_DG18 | BBB | BB00 | 92 | 0.14 |
| 15 | 1sa3_D_DG18_DG19 | B12 | BB04 | 92 | 0.13 |
| 16 | 1sa3_D_DG19_DG20 | BBB | BB00 | 76 | 0.25 |
| 17 | 1sa3_E_DC1_DC2 | BBB | BB00 | 87 | 0.20 |
| 18 | 1sa3_E_DC2_DC3 | BBB | BB00 | 98 | 0.08 |
| 19 | 1sa3_E_DC3_DC4 | BBB | BB00 | 96 | 0.17 |
| 20 | 1sa3_E_DC4_DC5 | BBB | BB01 | 60 | 0.19 |
| 21 | 1sa3_E_DC5_DG6 | B-A | BA10 | 30 | 0.36 |
| 22 | 1sa3_E_DG6_DG7 | A-B | AB04 | 28 | 0.38 |
| 23 | 1sa3_E_DG7_DG8 | BBB | BB00 | 33 | 0.42 |
| 24 | 1sa3_E_DG8_DG9 | BBB | BB00 | 87 | 0.26 |
| 25 | 1sa3_F_DC12_DC13 | BBB | BB00 | 78 | 0.18 |
| 26 | 1sa3_F_DC13_DC14 | BBB | BB00 | 94 | 0.19 |
| 27 | 1sa3_F_DC14_DC15 | BBw | BB02 | 69 | 0.30 |
| 28 | 1sa3_F_DC15_DG16 | BBB | BB00 | 33 | 0.41 |
| 29 | 1sa3_F_DG16_DG17 | BBB | BB00 | 70 | 0.32 |
| 30 | 1sa3_F_DG17_DG18 | BBB | BB00 | 88 | 0.14 |
| 31 | 1sa3_F_DG18_DG19 | B12 | BB04 | 73 | 0.16 |
| 32 | 1sa3_F_DG19_DG20 | BBB | BB00 | 80 | 0.18 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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