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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
DPO with AT matched

Results of the assignment of 112 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011s9f_E_DG1_DG2BBBBB00880.22 BB00
0021s9f_E_DG2_DG3BB2BB07700.35 BB07
0031s9f_E_DG3_DG4BBwBB02900.26 BB02
0041s9f_E_DG4_DG5BBBBB00770.20 BB00
0051s9f_E_DG5_DA6B12BB04910.14 BB04
0061s9f_E_DA6_DA7BBBBB00920.13 BB00
0071s9f_E_DA7_DG8B12BB04920.14 BB04
0081s9f_E_DG8_DG9BBwBB02810.14 BB02
0091s9f_E_DG9_DA10BBBBB00800.21 BB00
0101s9f_E_DA10_DC11BBBBB00820.17 BB00
0111s9f_E_DC11_DT12BBBBB00760.33 BB00
0121s9f_E_DT12_DA13BBBBB00590.28 BB00
0131s9f_I_DT2_DC3NANNANT02.13 OP28
0141s9f_I_DC3_DA4BBBBB00570.31 BB00
0151s9f_I_DA4_DG5NANNANT01.04 OP01
0161s9f_I_DG5_DT6BBBBB00830.25 BB00
0171s9f_I_DT6_DA7BBBBB00760.32 BB00
0181s9f_I_DA7_DG8BBBBB00830.17 BB00
0191s9f_I_DG8_DT9BBBBB00700.36 BB00
0201s9f_I_DT9_DC10BBBBB00930.13 BB00
0211s9f_I_DC10_DC11B12BB04800.17 BB04
0221s9f_I_DC11_DT12BBBBB00830.21 BB00
0231s9f_I_DT12_DT13BBBBB00960.10 BB00
0241s9f_I_DT13_DC14BBBBB00890.15 BB00
0251s9f_I_DC14_DC15B12BB04800.22 BB04
0261s9f_I_DC15_DC16BBBBB00810.28 BB00
0271s9f_I_DC16_DC17BBBBB00890.29 BB00
0281s9f_I_DC17_DC18BBwBB11780.30 BB11
0291s9f_F_DG1_DG2BBBBB00890.22 BB00
0301s9f_F_DG2_DG3B12BB04650.33 BB04
0311s9f_F_DG3_DG4BBwBB02890.21 BB02
0321s9f_F_DG4_DG5BBBBB00540.33 BB00
0331s9f_F_DG5_DA6BBBBB00920.18 BB00
0341s9f_F_DA6_DA7BBBBB00870.22 BB00
0351s9f_F_DA7_DG8B12BB04670.23 BB04
0361s9f_F_DG8_DG9BBwBB02760.18 BB02
0371s9f_F_DG9_DA10BBBBB00830.19 BB00
0381s9f_F_DA10_DC11BBBBB00690.21 BB00
0391s9f_F_DC11_DT12BBBBB00610.39 BB00
0401s9f_F_DT12_DA13BBBBB00330.34 BB00
0411s9f_J_DT2_DC3NANNANT00.91 OP21
0421s9f_J_DC3_DA4BBBBB00620.30 BB00
0431s9f_J_DA4_DG5NANNANT00.46 OP28
0441s9f_J_DG5_DT6BBBBB00550.36 BB00
0451s9f_J_DT6_DA7BBBBB00780.29 BB00
0461s9f_J_DA7_DG8BBBBB00920.17 BB00
0471s9f_J_DG8_DT9B12BB04750.27 BB04
0481s9f_J_DT9_DC10BBBBB00870.12 BB00
0491s9f_J_DC10_DC11BBBBB00900.17 BB00
0501s9f_J_DC11_DT12BBBBB00890.18 BB00
0511s9f_J_DT12_DT13BBBBB00900.14 BB00
0521s9f_J_DT13_DC14BBBBB00820.20 BB00
0531s9f_J_DC14_DC15BBBBB00700.26 BB00
0541s9f_J_DC15_DC16BBBBB00740.30 BB00
0551s9f_J_DC16_DC17BBBBB00800.27 BB00
0561s9f_J_DC17_DC18BBwBB02500.43 BB02
0571s9f_G_DG1_DG2BBBBB00860.26 BB00
0581s9f_G_DG2_DG3B12BB04640.30 BB04
0591s9f_G_DG3_DG4BBwBB02880.20 BB02
0601s9f_G_DG4_DG5BBBBB00520.34 BB00
0611s9f_G_DG5_DA6BBBBB00810.22 BB00
0621s9f_G_DA6_DA7BBBBB00820.21 BB00
0631s9f_G_DA7_DG8BBBBB00680.28 BB00
0641s9f_G_DG8_DG9BBwBB02330.31 BB02
0651s9f_G_DG9_DA10BBBBB00830.19 BB00
0661s9f_G_DA10_DC11BBBBB01900.17 BB01
0671s9f_G_DC11_DT12BBBBB00660.22 BB00
0681s9f_G_DT12_DA13BBBBB00750.18 BB00
0691s9f_K_DT2_DC3NANNANT01.03 OP21
0701s9f_K_DC3_DA4BBBBB00640.40 BB00
0711s9f_K_DA4_DG5NANNANT00.53 OP06
0721s9f_K_DG5_DT6BBBBB01790.29 BB01
0731s9f_K_DT6_DA7BBBBB00660.27 BB00
0741s9f_K_DA7_DG8BBBBB00540.25 BB00
0751s9f_K_DG8_DT9BBBBB00470.46 BB00
0761s9f_K_DT9_DC10BBBBB00950.12 BB00
0771s9f_K_DC10_DC11BBBBB00830.22 BB00
0781s9f_K_DC11_DT12BBBBB00830.21 BB00
0791s9f_K_DT12_DT13BBBBB00950.17 BB00
0801s9f_K_DT13_DC14BBBBB00820.24 BB00
0811s9f_K_DC14_DC15B12BB04680.23 BB04
0821s9f_K_DC15_DC16BBBBB00780.28 BB00
0831s9f_K_DC16_DC17BBBBB00810.24 BB00
0841s9f_K_DC17_DC18BBwBB11710.16 BB11
0851s9f_H_DG1_DG2BBBBB00890.23 BB00
0861s9f_H_DG2_DG3BB2BB07540.40 BB07
0871s9f_H_DG3_DG4BBwBB02660.31 BB02
0881s9f_H_DG4_DG5BBBBB00770.25 BB00
0891s9f_H_DG5_DA6B12BB04840.11 BB04
0901s9f_H_DA6_DA7BBBBB00780.29 BB00
0911s9f_H_DA7_DG8BBBBB00750.23 BB00
0921s9f_H_DG8_DG9BBwBB02220.37 BB02
0931s9f_H_DG9_DA10BBBBB00700.27 BB00
0941s9f_H_DA10_DC11BBBBB00770.23 BB00
0951s9f_H_DC11_DT12BBBBB00780.25 BB00
0961s9f_H_DT12_DA13BBBBB00560.24 BB00
0971s9f_L_DT2_DC3NANNANT00.97 OP21
0981s9f_L_DC3_DA4BBBBB00770.20 BB00
0991s9f_L_DA4_DG5NANNANT00.69 OP28
1001s9f_L_DG5_DT6BBBBB01770.28 BB01
1011s9f_L_DT6_DA7BBBBB00670.28 BB00
1021s9f_L_DA7_DG8BBBBB00710.22 BB00
1031s9f_L_DG8_DT9BBBBB00610.43 BB00
1041s9f_L_DT9_DC10BBBBB00950.19 BB00
1051s9f_L_DC10_DC11BBBBB00820.26 BB00
1061s9f_L_DC11_DT12BBBBB00840.20 BB00
1071s9f_L_DT12_DT13BBBBB00960.11 BB00
1081s9f_L_DT13_DC14BBBBB00780.22 BB00
1091s9f_L_DC14_DC15B12BB04860.21 BB04
1101s9f_L_DC15_DC16BBBBB00740.30 BB00
1111s9f_L_DC16_DC17BBwBB02830.23 BB02
1121s9f_L_DC17_DC18BBBBB00810.30 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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