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Conformers: ABBIImiBZICOPNSYNN
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DPO4 with GT mismatch

Results of the assignment of 108 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011s97_E_DG1_DG2AAAAA00130.52 AA00
0021s97_E_DG2_DG3AAAAA02350.35 AA02
0031s97_E_DG3_DG4NANNANT00.39 AA04
0041s97_E_DG4_DG5AAwAA01190.42 AA01
0051s97_E_DG5_DA6AAAAA00230.39 AA00
0061s97_E_DA6_DA7AAAAA04260.40 AA04
0071s97_E_DA7_DG8AAAAA00110.48 AA00
0081s97_E_DG8_DG9AAAAA00390.41 AA00
0091s97_E_DG9_DA10AAAAA00280.42 AA00
0101s97_E_DA10_DC11AAAAA00150.49 AA00
0111s97_E_DC11_DT12AAAAA02160.57 AA02
0121s97_I_DT2_DC3NANNANT00.79 OP21
0131s97_I_DC3_DA4NANNANT00.32 AA00
0141s97_I_DA4_DG5NANNANT00.75 OP01
0151s97_I_DG5_DT6AAAAA00410.41 AA00
0161s97_I_DT6_DA7AAAAA0270.45 AA02
0171s97_I_DA7_DG8AAAAA02360.41 AA02
0181s97_I_DG8_DT9AAAAA02260.47 AA02
0191s97_I_DT9_DC10AAAAA00300.43 AA00
0201s97_I_DC10_DC11AAAAA00310.44 AA00
0211s97_I_DC11_DT12AAAAA00350.41 AA00
0221s97_I_DT12_DT13AAAAA04310.38 AA04
0231s97_I_DT13_DC14AAAAA00210.47 AA00
0241s97_I_DC14_DC15AAAAA00220.43 AA00
0251s97_I_DC15_DC16AAAAA00380.33 AA00
0261s97_I_DC16_DC17AAAAA00120.57 AA00
0271s97_I_DC17_DC18AAAAA00260.40 AA00
0281s97_F_DG1_DG2AAAAA00170.49 AA00
0291s97_F_DG2_DG3AAAAA00160.46 AA00
0301s97_F_DG3_DG4AAAAA04530.36 AA04
0311s97_F_DG4_DG5AAAAA00120.35 AA00
0321s97_F_DG5_DA6AAAAA04330.38 AA04
0331s97_F_DA6_DA7NANNANT00.37 AA04
0341s97_F_DA7_DG8AAAAA0060.51 AA00
0351s97_F_DG8_DG9AAwAA01550.24 AA01
0361s97_F_DG9_DA10AAAAA00390.41 AA00
0371s97_F_DA10_DC11AAAAA00150.51 AA00
0381s97_F_DC11_DT12AAAAA00200.43 AA00
0391s97_J_DT2_DC3NANNANT00.99 OP21
0401s97_J_DC3_DA4NANNANT00.32 AA00
0411s97_J_DA4_DG5NANNANT00.49 OP02
0421s97_J_DG5_DT6AAAAA00260.40 AA00
0431s97_J_DT6_DA7AAAAA02160.43 AA02
0441s97_J_DA7_DG8AAAAA02520.37 AA02
0451s97_J_DG8_DT9AAAAA02360.46 AA02
0461s97_J_DT9_DC10AAAAA00230.46 AA00
0471s97_J_DC10_DC11AAAAA00110.46 AA00
0481s97_J_DC11_DT12AAAAA00330.44 AA00
0491s97_J_DT12_DT13AAAAA00270.46 AA00
0501s97_J_DT13_DC14AAAAA00270.45 AA00
0511s97_J_DC14_DC15AAAAA00260.42 AA00
0521s97_J_DC15_DC16AAAAA00290.32 AA00
0531s97_J_DC16_DC17AAAAA00130.55 AA00
0541s97_J_DC17_DC18AAAAA00240.38 AA00
0551s97_G_DG1_DG2AAAAA00240.46 AA00
0561s97_G_DG2_DG3AAAAA00160.41 AA00
0571s97_G_DG3_DG4AAAAA04580.26 AA04
0581s97_G_DG4_DG5AAAAA04380.48 AA04
0591s97_G_DG5_DA6AAAAA02310.41 AA02
0601s97_G_DA6_DA7AAAAA02100.43 AA02
0611s97_G_DA7_DG8AAAAA04250.40 AA04
0621s97_G_DG8_DG9AAwAA01570.23 AA01
0631s97_G_DG9_DA10AAAAA00480.37 AA00
0641s97_G_DA10_DC11AAAAA00240.49 AA00
0651s97_G_DC11_DT12AAAAA00180.41 AA00
0661s97_K_DT2_DC3NANNANT02.12 OP06
0671s97_K_DC3_DA4AAAAA00130.45 AA00
0681s97_K_DA4_DG5NANNANT00.43 OP06
0691s97_K_DG5_DT6AAwAA01320.23 AA01
0701s97_K_DT6_DA7AAAAA09380.32 AA09
0711s97_K_DA7_DG8AAAAA02640.39 AA02
0721s97_K_DG8_DT9AAAAA02170.47 AA02
0731s97_K_DT9_DC10AAAAA00340.39 AA00
0741s97_K_DC10_DC11AAAAA00200.46 AA00
0751s97_K_DC11_DT12AAAAA00530.41 AA00
0761s97_K_DT12_DT13AAAAA00100.45 AA00
0771s97_K_DT13_DC14AAAAA00120.51 AA00
0781s97_K_DC14_DC15AAAAA00320.40 AA00
0791s97_K_DC15_DC16AAAAA00380.34 AA00
0801s97_K_DC16_DC17AAAAA00180.54 AA00
0811s97_K_DC17_DC18AAAAA00430.36 AA00
0821s97_H_DG1_DG2AAAAA00190.53 AA00
0831s97_H_DG2_DG3AAAAA00360.39 AA00
0841s97_H_DG3_DG4AAAAA00130.38 AA00
0851s97_H_DG4_DG5NANNANT00.39 AA04
0861s97_H_DG5_DA6AAAAA00100.42 AA00
0871s97_H_DA6_DA7AAAAA00250.37 AA00
0881s97_H_DA7_DG8AAAAA04510.38 AA04
0891s97_H_DG8_DG9AAAAA00240.32 AA00
0901s97_H_DG9_DA10AAAAA00530.34 AA00
0911s97_H_DA10_DC11AAAAA00460.42 AA00
0921s97_H_DC11_DT12AAAAA00100.38 AA00
0931s97_L_DT2_DC3NANNANT01.19 OP31
0941s97_L_DC3_DA4NANNANT00.35 AAS1
0951s97_L_DA4_DG5NANNANT00.82 OP01
0961s97_L_DG5_DT6AAwAA01590.19 AA01
0971s97_L_DT6_DA7AAAAA0990.40 AA09
0981s97_L_DA7_DG8AAAAA02650.38 AA02
0991s97_L_DG8_DT9AAAAA02160.49 AA02
1001s97_L_DT9_DC10AAAAA00410.39 AA00
1011s97_L_DC10_DC11AAAAA00330.46 AA00
1021s97_L_DC11_DT12AAAAA00550.41 AA00
1031s97_L_DT12_DT13AAAAA00280.47 AA00
1041s97_L_DT13_DC14AAAAA00360.47 AA00
1051s97_L_DC14_DC15AAAAA00330.41 AA00
1061s97_L_DC15_DC16AAAAA00250.38 AA00
1071s97_L_DC16_DC17AAAAA00170.51 AA00
1081s97_L_DC17_DC18AAAAA00200.39 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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