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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011s10_B_DG1801_DG1802BBBBB00780.20 BB00
021s10_B_DG1802_DG1803BB2BB07510.39 BB07
031s10_B_DG1803_DG1804BBBBB00810.24 BB00
041s10_B_DG1804_DG1805B12BB04820.18 BB04
051s10_B_DG1805_DA1806BBBBB00730.34 BB00
061s10_B_DA1806_DA1807BBBBB00930.13 BB00
071s10_B_DA1807_DG1808BBBBB00760.31 BB00
081s10_B_DG1808_DG1809BBBBB00720.15 BB00
091s10_B_DG1809_DA1810BBBBB00810.27 BB00
101s10_B_DA1810_DC1811BBBBB01790.16 BB01
111s10_B_DC1811_DT1812BBBBB00300.23 BB00
121s10_B_DT1812_DA1813NANNANT00.90 BA10
131s10_C_DT1902_DC1903NANNANT00.84 OP18
141s10_C_DC1903_DA1904BBBBB00470.45 BB00
151s10_C_DA1904_DG1905NANNANT00.55 OP28
161s10_C_DA1907_DG1908BBBBB00710.23 BB00
171s10_C_DG1908_DT1909BBBBB00520.44 BB00
181s10_C_DT1909_DC1910BBBBB00900.14 BB00
191s10_C_DC1910_DC1911BBBBB00760.22 BB00
201s10_C_DC1911_DT1912BBBBB00870.19 BB00
211s10_C_DT1912_DT1913BBBBB00870.13 BB00
221s10_C_DT1913_DC1914BBBBB00760.20 BB00
231s10_C_DC1914_DC1915BBBBB00850.24 BB00
241s10_C_DC1915_DC1916BBBBB00840.29 BB00
251s10_C_DC1916_DC1917BBBBB00770.23 BB00
261s10_C_DC1917_DC1918BBBBB01110.38 BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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