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Conformers: ABBIImiBZICOPNSYNN
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MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011rva_C_DA1_DA2SYNBBS1540.33 BBS1
021rva_C_DA2_DA3BBBBB00270.23 BB00
031rva_C_DA3_DG4BBBBB00480.22 BB00
041rva_C_DG4_DA5B-ABA16840.22 BA16
051rva_C_DA5_DT6AAAAA00740.21 AA00
061rva_C_DT6_DA7A-BAB04780.18 AB04
071rva_C_DA7_DT8BBBBB01340.23 BB01
081rva_C_DT8_DC9BBBBB01370.31 BB01
091rva_C_DC9_DT10BBBBB00240.26 BB00
101rva_C_DT10_DT11BBBBB00770.28 BB00
111rva_D_DA1_DA2SYNBBS1740.32 BBS1
121rva_D_DA2_DA3B-ABA05690.29 BA05
131rva_D_DA3_DG4A-BAB03570.23 AB03
141rva_D_DG4_DA5B-ABA16810.21 BA16
151rva_D_DA5_DT6AAAAA00800.22 AA00
161rva_D_DT6_DA7A-BAB05760.30 AB05
171rva_D_DA7_DT8BBBBB01390.28 BB01
181rva_D_DT8_DC9BBBBB01470.32 BB01
191rva_D_DC9_DT10A-BAB03940.27 AB03
201rva_D_DT10_DT11BBBBB00780.23 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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