DNATCO v4.1: results

CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE

Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1run_C_DG-5_DC-4	B12	BB04	42	0.46	BB04
02	1run_C_DC-4_DG-3	NAN	NANT	0	0.80	BB04
03	1run_C_DG-3_DA-2	BB2	BB07	76	0.22	BB07
04	1run_C_DA-2_DA-1	BBB	BB00	79	0.19	BB00
05	1run_C_DA-1_DA1	NAN	NANT	0	0.35	BB00
06	1run_C_DA1_DA2	BBB	BB00	78	0.26	BB00
07	1run_C_DA2_DA3	BBB	BB00	57	0.22	BB00
08	1run_C_DA3_DT4	BBw	BB02	35	0.19	BB02
09	1run_C_DT4_DG5	B12	BB04	33	0.38	BB04
10	1run_C_DG5_DT6	miB	BB10	47	0.33	BB10
11	1run_C_DT6_DG7	NAN	NANT	0	0.66	BB00
12	1run_C_DG7_DA8	B12	BB04	20	0.40	BB04
13	1run_C_DA8_DT9	BBB	BB00	87	0.32	BB00
14	1run_D_DC10_DT11	B12	BB04	42	0.24	BB04
15	1run_D_DT11_DA12	BBB	BB00	68	0.34	BB00
16	1run_D_DA12_DG13	BBB	BB00	66	0.28	BB00
17	1run_D_DG13_DA14	BBB	BB00	69	0.45	BB00
18	1run_D_DA14_DT15	NAN	NANT	0	0.32	BB10
19	1run_D_DT15_DC16	NAN	NANT	0	0.48	AA06
20	1run_D_DC16_DA17	NAN	NANT	0	0.62	IC06
21	1run_D_DA17_DC18	NAN	NANT	0	0.41	BB17
22	1run_D_DC18_DA19	NAN	NANT	0	0.94	BB17
23	1run_D_DA19_DT20	miB	BB10	41	0.41	BB10
24	1run_D_DT20_DT21	BBB	BB00	43	0.24	BB00
25	1run_D_DT21_DT22	BBB	BB01	49	0.24	BB01
26	1run_D_DT22_DT23	NAN	NANT	0	0.27	BB00
27	1run_D_DT23_DT24	BBB	BB00	72	0.32	BB00
28	1run_D_DT24_DC25	NAN	NANT	0	0.54	BB11
29	1run_D_DC25_DG26	NAN	NANT	0	0.46	AB02
30	1run_E_DA15_DT14	miB	BB10	37	0.42	BB10
31	1run_E_DG16_DA15	BB2	BB07	28	0.37	BB07
32	1run_E_DT17_DG16	NAN	NANT	0	0.69	BB07
33	1run_E_DG18_DT17	BBB	BB00	36	0.44	BB00
34	1run_E_DT19_DG18	BBB	BB00	93	0.26	BB00
35	1run_E_DA20_DT19	BBw	BB02	60	0.22	BB02
36	1run_E_DA21_DA20	BBB	BB00	41	0.39	BB00
37	1run_E_DA22_DA21	BBw	BB02	55	0.36	BB02
38	1run_E_DA23_DA22	NAN	NANT	0	0.41	BB17
39	1run_E_DA24_DA23	BBw	BB16	39	0.55	BB16
40	1run_E_DG25_DA24	NAN	NANT	0	0.45	BB11
41	1run_E_DC26_DG25	B12	BB04	13	0.37	BB04
42	1run_E_DG27_DC26	NAN	NANT	0	0.89	BB14
43	1run_F_DC-3_DG-4	BB2	BB07	10	0.40	BB07
44	1run_F_DT-2_DC-3	BBB	BB00	72	0.26	BB00
45	1run_F_DT-1_DT-2	BBB	BB00	78	0.32	BB00
46	1run_F_DT1_DT-1	BBB	BB00	88	0.25	BB00
47	1run_F_DT2_DT1	BBB	BB00	81	0.26	BB00
48	1run_F_DT3_DT2	BBB	BB00	77	0.22	BB00
49	1run_F_DA4_DT3	BBB	BB00	54	0.23	BB00
50	1run_F_DC5_DA4	BB2	BB07	43	0.43	BB07
51	1run_F_DA6_DC5	NAN	NANT	0	0.54	AB02
52	1run_F_DC7_DA6	NAN	NANT	0	0.66	BB17
53	1run_F_DT8_DC7	NAN	NANT	0	0.48	BB07
54	1run_F_DA9_DT8	BBB	BB00	41	0.33	BB00
55	1run_F_DG10_DA9	BBB	BB00	47	0.41	BB00
56	1run_F_DA11_DG10	BBw	BB02	64	0.30	BB02
57	1run_F_DT12_DA11	B12	BB04	57	0.30	BB04
58	1run_F_DC13_DT12	A-B	AB01	16	0.43	AB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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A

A-B

B-A

IC

OPN

Z

N

Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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