Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MutY adenine glycosylase in complex with DNA containing an abasic site
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1rrs_B_DA1_DA2 | BBB | BB00 | 71 | 0.37 |
| 02 | 1rrs_B_DA2_DG3 | BB2 | BB07 | 79 | 0.22 |
| 03 | 1rrs_B_DG3_DA4 | BBB | BB00 | 96 | 0.14 |
| 04 | 1rrs_B_DA4_DC5 | BBB | BB00 | 73 | 0.38 |
| 05 | 1rrs_B_DC5_8OG6 | NAN | NANT | 0 | 1.07 |
| 06 | 1rrs_B_8OG6_DT7 | BBB | BB00 | 50 | 0.36 |
| 07 | 1rrs_B_DT7_DG8 | BBB | BB00 | 64 | 0.27 |
| 08 | 1rrs_B_DG8_DG9 | miB | BB10 | 73 | 0.26 |
| 09 | 1rrs_B_DG9_DA10 | BBw | BB11 | 87 | 0.28 |
| 10 | 1rrs_B_DA10_DC11 | BBw | BB03 | 46 | 0.41 |
| 11 | 1rrs_C_DG13_DT14 | BBB | BB00 | 38 | 0.30 |
| 12 | 1rrs_C_DT14_DC15 | BBB | BB00 | 98 | 0.09 |
| 13 | 1rrs_C_DC15_DC16 | miB | BB13 | 51 | 0.25 |
| 14 | 1rrs_C_DC16_DA17 | BBB | BB00 | 32 | 0.47 |
| 15 | 1rrs_C_DG19_DT20 | BBB | BB00 | 91 | 0.22 |
| 16 | 1rrs_C_DT20_DC21 | BBB | BB00 | 95 | 0.17 |
| 17 | 1rrs_C_DC21_DT22 | BBB | BB00 | 90 | 0.17 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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