Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of CIRV p19 bound to siRNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 80 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1rpu_C_C.A1_G.A2 | AAA | AA00 | 68 | 0.27 |
| 02 | 1rpu_C_C.B1_G.B2 | AAA | AA00 | 70 | 0.26 |
| 03 | 1rpu_C_G.A2_U.A3 | AAw | AA01 | 68 | 0.28 |
| 04 | 1rpu_C_G.B2_U.B3 | AAw | AA01 | 75 | 0.18 |
| 05 | 1rpu_C_U.A3_A.A4 | AAA | AA08 | 74 | 0.23 |
| 06 | 1rpu_C_U.B3_A.B4 | AAA | AA08 | 73 | 0.39 |
| 07 | 1rpu_C_A.A4_C.A5 | AAA | AA00 | 85 | 0.22 |
| 08 | 1rpu_C_A.B4_C.B5 | AAu | AA12 | 50 | 0.41 |
| 09 | 1rpu_C_C.A5_G.A6 | AAA | AA00 | 86 | 0.20 |
| 10 | 1rpu_C_C.B5_G.B6 | AAA | AA00 | 64 | 0.28 |
| 11 | 1rpu_C_G.A6_C.A7 | AAA | AA00 | 83 | 0.19 |
| 12 | 1rpu_C_G.B6_C.B7 | AAA | AA08 | 40 | 0.44 |
| 13 | 1rpu_C_C.A7_G.A8 | AAA | AA00 | 95 | 0.25 |
| 14 | 1rpu_C_C.B7_G.B8 | AAA | AA00 | 59 | 0.14 |
| 15 | 1rpu_C_G.A8_U.A9 | AAA | AA00 | 88 | 0.32 |
| 16 | 1rpu_C_G.B8_U.B9 | AAA | AA08 | 81 | 0.18 |
| 17 | 1rpu_C_U.A9_C.A10 | AAA | AA00 | 76 | 0.27 |
| 18 | 1rpu_C_U.B9_C.B10 | AAu | AA12 | 75 | 0.27 |
| 19 | 1rpu_C_C.A10_A.A11 | AAA | AA00 | 66 | 0.17 |
| 20 | 1rpu_C_C.B10_A.B11 | AAA | AA00 | 34 | 0.51 |
| 21 | 1rpu_C_A.A11_C.A12 | AAA | AA00 | 79 | 0.26 |
| 22 | 1rpu_C_A.B11_C.B12 | AAA | AA08 | 84 | 0.22 |
| 23 | 1rpu_C_C.A12_G.A13 | AAA | AA00 | 83 | 0.17 |
| 24 | 1rpu_C_C.B12_G.B13 | AAA | AA00 | 69 | 0.17 |
| 25 | 1rpu_C_G.A13_C.A14 | AAA | AA00 | 98 | 0.11 |
| 26 | 1rpu_C_G.B13_C.B14 | AAA | AA00 | 86 | 0.13 |
| 27 | 1rpu_C_C.A14_G.A15 | AAA | AA00 | 56 | 0.29 |
| 28 | 1rpu_C_C.B14_G.B15 | AAA | AA00 | 70 | 0.21 |
| 29 | 1rpu_C_G.A15_U.A16 | AAA | AA00 | 82 | 0.26 |
| 30 | 1rpu_C_G.B15_U.B16 | AAA | AA00 | 92 | 0.21 |
| 31 | 1rpu_C_U.A16_A.A17 | AAA | AA00 | 85 | 0.23 |
| 32 | 1rpu_C_U.B16_A.B17 | AAA | AA00 | 89 | 0.14 |
| 33 | 1rpu_C_A.A17_C.A18 | AAw | AA01 | 79 | 0.26 |
| 34 | 1rpu_C_A.B17_C.B18 | AAw | AA01 | 63 | 0.32 |
| 35 | 1rpu_C_C.A18_G.A19 | AAA | AA08 | 58 | 0.26 |
| 36 | 1rpu_C_C.B18_G.B19 | AAA | AA08 | 42 | 0.33 |
| 37 | 1rpu_C_G.A19_U.A20 | NAN | NANT | 0 | 0.74 |
| 38 | 1rpu_C_G.B19_U.B20 | NAN | NANT | 0 | 0.57 |
| 39 | 1rpu_C_U.A20_U.A21 | NAN | NANT | 0 | 0.98 |
| 40 | 1rpu_C_U.B20_U.B21 | NAN | NANT | 0 | 2.01 |
| 41 | 1rpu_D_C.A1_G.A2 | AAA | AA00 | 91 | 0.21 |
| 42 | 1rpu_D_C.B1_G.B2 | AAA | AA00 | 85 | 0.20 |
| 43 | 1rpu_D_G.A2_U.A3 | AAA | AA00 | 82 | 0.20 |
| 44 | 1rpu_D_G.B2_U.B3 | AAA | AA00 | 78 | 0.21 |
| 45 | 1rpu_D_U.A3_A.A4 | AAw | AA01 | 57 | 0.24 |
| 46 | 1rpu_D_U.B3_A.B4 | AAw | AA01 | 90 | 0.11 |
| 47 | 1rpu_D_A.A4_C.A5 | AAw | AA06 | 53 | 0.37 |
| 48 | 1rpu_D_A.B4_C.B5 | NAN | NANT | 0 | 0.57 |
| 49 | 1rpu_D_C.A5_G.A6 | AAA | AA08 | 88 | 0.18 |
| 50 | 1rpu_D_C.B5_G.B6 | AAA | AA00 | 32 | 0.41 |
| 51 | 1rpu_D_G.A6_C.A7 | AAA | AA00 | 78 | 0.18 |
| 52 | 1rpu_D_G.B6_C.B7 | AAA | AA00 | 83 | 0.16 |
| 53 | 1rpu_D_C.A7_G.A8 | AAA | AA00 | 81 | 0.24 |
| 54 | 1rpu_D_C.B7_G.B8 | AAA | AA00 | 71 | 0.21 |
| 55 | 1rpu_D_G.A8_U.A9 | AAw | AA01 | 92 | 0.10 |
| 56 | 1rpu_D_G.B8_U.B9 | AAw | AA01 | 83 | 0.16 |
| 57 | 1rpu_D_U.A9_C.A10 | AAu | AA12 | 62 | 0.34 |
| 58 | 1rpu_D_U.B9_C.B10 | AAA | AA08 | 89 | 0.21 |
| 59 | 1rpu_D_C.A10_A.A11 | AAA | AA00 | 55 | 0.49 |
| 60 | 1rpu_D_C.B10_A.B11 | AAA | AA08 | 74 | 0.24 |
| 61 | 1rpu_D_A.A11_C.A12 | AAA | AA00 | 67 | 0.30 |
| 62 | 1rpu_D_A.B11_C.B12 | AAA | AA00 | 76 | 0.17 |
| 63 | 1rpu_D_C.A12_G.A13 | AAA | AA00 | 77 | 0.16 |
| 64 | 1rpu_D_C.B12_G.B13 | AAA | AA00 | 66 | 0.29 |
| 65 | 1rpu_D_G.A13_C.A14 | AAA | AA00 | 72 | 0.23 |
| 66 | 1rpu_D_G.B13_C.B14 | AAA | AA00 | 70 | 0.22 |
| 67 | 1rpu_D_C.A14_G.A15 | AAA | AA00 | 89 | 0.26 |
| 68 | 1rpu_D_C.B14_G.B15 | AAA | AA00 | 22 | 0.35 |
| 69 | 1rpu_D_G.A15_U.A16 | AAw | AA01 | 64 | 0.34 |
| 70 | 1rpu_D_G.B15_U.B16 | AAw | AA10 | 59 | 0.37 |
| 71 | 1rpu_D_U.A16_A.A17 | AAA | AA08 | 89 | 0.17 |
| 72 | 1rpu_D_U.B16_A.B17 | AAA | AA08 | 78 | 0.19 |
| 73 | 1rpu_D_A.A17_C.A18 | AAA | AA00 | 91 | 0.14 |
| 74 | 1rpu_D_A.B17_C.B18 | AAA | AA00 | 68 | 0.26 |
| 75 | 1rpu_D_C.A18_G.A19 | AAA | AA00 | 70 | 0.28 |
| 76 | 1rpu_D_C.B18_G.B19 | AAA | AA00 | 78 | 0.19 |
| 77 | 1rpu_D_G.A19_U.A20 | NAN | NANT | 0 | 0.76 |
| 78 | 1rpu_D_G.B19_U.B20 | NAN | NANT | 0 | 0.66 |
| 79 | 1rpu_D_U.A20_U.A21 | NAN | NANT | 0 | 0.68 |
| 80 | 1rpu_D_U.B20_U.B21 | NAN | NANT | 0 | 0.98 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A | ||||
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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| IC | ||||
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| OPN | ||||
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| Z | ||||
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| N | ||||
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