Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1rm1_D_DA1_DT2 | BBw | BB03 | 33 | 0.48 |
| 02 | 1rm1_D_DT2_DC3 | BBw | BB11 | 48 | 0.35 |
| 03 | 1rm1_D_DC3_DG4 | NAN | NANT | 0 | 0.89 |
| 04 | 1rm1_D_DG4_DA5 | NAN | NANT | 0 | 0.48 |
| 05 | 1rm1_D_DA5_DT6 | B12 | BB04 | 63 | 0.26 |
| 06 | 1rm1_D_DT6_DC7 | NAN | NANT | 0 | 0.46 |
| 07 | 1rm1_D_DC7_DG8 | BBB | BB00 | 60 | 0.32 |
| 08 | 1rm1_D_DG8_DA9 | NAN | NANT | 0 | 0.39 |
| 09 | 1rm1_D_DA9_DT10 | NAN | NANT | 0 | 0.69 |
| 10 | 1rm1_D_DT10_DA11 | BBB | BB00 | 46 | 0.41 |
| 11 | 1rm1_D_DA11_DT12 | NAN | NANT | 0 | 0.55 |
| 12 | 1rm1_D_DT12_DA13 | BBB | BB00 | 45 | 0.51 |
| 13 | 1rm1_D_DA13_DA14 | BBB | BB00 | 37 | 0.48 |
| 14 | 1rm1_D_DA14_DA15 | B12 | BB04 | 54 | 0.38 |
| 15 | 1rm1_D_DA15_DA16 | BBB | BB00 | 46 | 0.45 |
| 16 | 1rm1_D_DA16_DC17 | NAN | NANT | 0 | 0.65 |
| 17 | 1rm1_D_DC17_DG18 | NAN | NANT | 0 | 0.89 |
| 18 | 1rm1_E_DC19_DG20 | BBB | BB00 | 73 | 0.33 |
| 19 | 1rm1_E_DG20_DT21 | BBB | BB00 | 40 | 0.44 |
| 20 | 1rm1_E_DT21_DT22 | BBB | BB00 | 60 | 0.33 |
| 21 | 1rm1_E_DT22_DT23 | BBB | BB00 | 52 | 0.34 |
| 22 | 1rm1_E_DT23_DT24 | BBB | BB00 | 18 | 0.56 |
| 23 | 1rm1_E_DT24_DA25 | B12 | BB04 | 32 | 0.39 |
| 24 | 1rm1_E_DA25_DT26 | BBB | BB00 | 41 | 0.39 |
| 25 | 1rm1_E_DT26_DA27 | BBB | BB00 | 46 | 0.38 |
| 26 | 1rm1_E_DA27_DT28 | B12 | BB04 | 72 | 0.21 |
| 27 | 1rm1_E_DT28_DC29 | BBB | BB00 | 78 | 0.21 |
| 28 | 1rm1_E_DC29_DG30 | miB | BB13 | 73 | 0.28 |
| 29 | 1rm1_E_DG30_DA31 | NAN | NANT | 0 | 0.57 |
| 30 | 1rm1_E_DA31_DT32 | NAN | NANT | 0 | 0.84 |
| 31 | 1rm1_E_DT32_DC33 | NAN | NANT | 0 | 0.38 |
| 32 | 1rm1_E_DC33_DG34 | BBw | BB11 | 32 | 0.66 |
| 33 | 1rm1_E_DG34_DA35 | BBB | BB00 | 52 | 0.42 |
| 34 | 1rm1_E_DA35_DT36 | miB | BB13 | 88 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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