DNATCO v4.1: results

Molecular basis of Box C/D RNA-protein interaction: co-crystal structure of the Archaeal sRNP intiation complex

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1rlg_C_G1_C2	AAA	AA08	84	0.15	AA08
02	1rlg_C_C2_5BU3	AAA	AA00	66	0.22	AA00
03	1rlg_C_5BU3_C4	AAA	AA00	86	0.14	AA00
04	1rlg_C_C4_5BU5	AAA	AA00	74	0.26	AA00
05	1rlg_C_5BU5_G6	A-B	AB05	15	0.48	AB05
06	1rlg_C_G6_A7	NAN	NANT	0	0.71	OP15
07	1rlg_C_A7_C8	NAN	NANT	0	1.25	AA05
08	1rlg_C_C8_C9	AAA	AA00	67	0.23	AA00
09	1rlg_C_C9_G10	AAA	AA00	80	0.27	AA00
10	1rlg_C_G10_A11	OPN	OP03	88	0.09	OP03
11	1rlg_C_A11_A12	AAA	AA00	51	0.37	AA00
12	1rlg_C_A12_A13	AAA	AA00	55	0.29	AA00
13	1rlg_C_A13_G14	AAw	AA05	69	0.27	AA05
14	1rlg_C_G14_G15	AAA	AA08	76	0.19	AA08
15	1rlg_C_G15_C16	NAN	NANT	0	0.33	AA01
16	1rlg_C_C16_G17	NAN	NANT	0	0.94	IC03
17	1rlg_C_G17_U18	NAN	NANT	0	0.73	OP21
18	1rlg_C_U18_G19	NAN	NANT	0	1.95	OP15
19	1rlg_C_G19_A20	NAN	NANT	0	0.59	OP26
20	1rlg_C_A20_5BU21	AAA	AA08	69	0.35	AA08
21	1rlg_C_5BU21_G22	AAA	AA08	88	0.14	AA08
22	1rlg_C_G22_A23	NAN	NANT	0	0.55	BB2S
23	1rlg_C_A23_G24	NAN	NANT	0	0.80	BA10
24	1rlg_C_G24_C25	AAA	AA08	86	0.12	AA08
25	1rlg_D_G1_C2	AAA	AA00	72	0.19	AA00
26	1rlg_D_C2_5BU3	AAA	AA00	92	0.12	AA00
27	1rlg_D_5BU3_C4	AAA	AA00	88	0.22	AA00
28	1rlg_D_C4_5BU5	AAA	AA00	92	0.26	AA00
29	1rlg_D_5BU5_G6	A-B	AB05	74	0.47	AB05
30	1rlg_D_G6_A7	NAN	NANT	0	0.47	OP10
31	1rlg_D_A7_C8	NAN	NANT	0	1.24	AA05
32	1rlg_D_C8_C9	AAA	AA00	77	0.12	AA00
33	1rlg_D_C9_G10	AAA	AA00	84	0.24	AA00
34	1rlg_D_G10_A11	OPN	OP03	71	0.12	OP03
35	1rlg_D_A11_A12	AAA	AA08	84	0.33	AA08
36	1rlg_D_A12_A13	AAA	AA00	58	0.28	AA00
37	1rlg_D_A13_G14	AAA	AA08	10	0.73	AA08
38	1rlg_D_G14_G15	AAA	AA00	90	0.19	AA00
39	1rlg_D_G15_C16	NAN	NANT	0	0.30	AA10
40	1rlg_D_C16_G17	NAN	NANT	0	1.24	BB2S
41	1rlg_D_G17_U18	NAN	NANT	0	1.91	OP09
42	1rlg_D_U18_G19	NAN	NANT	0	2.05	OP22
43	1rlg_D_G19_A20	OPN	OP10	53	0.23	OP10
44	1rlg_D_A20_5BU21	AAA	AA08	68	0.28	AA08
45	1rlg_D_5BU21_G22	AAA	AA00	83	0.25	AA00
46	1rlg_D_G22_A23	NAN	NANT	0	0.57	BB2S
47	1rlg_D_A23_G24	NAN	NANT	0	0.45	AAS1
48	1rlg_D_G24_C25	AAA	AA08	74	0.20	AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible