Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of Androgen Receptor DNA-Binding Domain Bound to a Direct Repeat Response Element
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1r4i_C_DC1_DC2 | BBB | BB00 | 63 | 0.24 |
| 02 | 1r4i_C_DC2_DA3 | BBB | BB00 | 48 | 0.43 |
| 03 | 1r4i_C_DA3_DG4 | BBw | BB02 | 77 | 0.19 |
| 04 | 1r4i_C_DG4_DA5 | BBB | BB00 | 71 | 0.25 |
| 05 | 1r4i_C_DA5_DA6 | BBB | BB00 | 63 | 0.17 |
| 06 | 1r4i_C_DA6_DC7 | BBB | BB00 | 63 | 0.20 |
| 07 | 1r4i_C_DC7_DA8 | BBB | BB00 | 53 | 0.33 |
| 08 | 1r4i_C_DA8_DT9 | BBw | BB02 | 42 | 0.34 |
| 09 | 1r4i_C_DT9_DC10 | BBw | BB02 | 50 | 0.29 |
| 10 | 1r4i_C_DC10_DA11 | BBB | BB00 | 21 | 0.34 |
| 11 | 1r4i_C_DA11_DA12 | B12 | BB04 | 52 | 0.28 |
| 12 | 1r4i_C_DA12_DG13 | BBB | BB00 | 84 | 0.21 |
| 13 | 1r4i_C_DG13_DA14 | BBB | BB00 | 60 | 0.37 |
| 14 | 1r4i_C_DA14_DA15 | BBB | BB00 | 73 | 0.17 |
| 15 | 1r4i_C_DA15_DC16 | BBw | BB02 | 84 | 0.17 |
| 16 | 1r4i_C_DC16_DA17 | BBB | BB00 | 67 | 0.26 |
| 17 | 1r4i_C_DA17_DG18 | BBB | BB00 | 14 | 0.35 |
| 18 | 1r4i_D_DC19_DT20 | BBB | BB00 | 68 | 0.31 |
| 19 | 1r4i_D_DT20_DG21 | BBB | BB00 | 62 | 0.31 |
| 20 | 1r4i_D_DG21_DT22 | BBB | BB00 | 29 | 0.41 |
| 21 | 1r4i_D_DT22_DT23 | BBB | BB00 | 66 | 0.30 |
| 22 | 1r4i_D_DT23_DC24 | BBB | BB00 | 66 | 0.27 |
| 23 | 1r4i_D_DC24_DT25 | BBB | BB00 | 55 | 0.29 |
| 24 | 1r4i_D_DT25_DT26 | BBB | BB00 | 48 | 0.23 |
| 25 | 1r4i_D_DT26_DG27 | B12 | BB04 | 63 | 0.27 |
| 26 | 1r4i_D_DG27_DA28 | BBB | BB00 | 65 | 0.18 |
| 27 | 1r4i_D_DA28_DT29 | BBw | BB02 | 65 | 0.29 |
| 28 | 1r4i_D_DT29_DG30 | BBw | BB02 | 71 | 0.27 |
| 29 | 1r4i_D_DG30_DT31 | BBB | BB00 | 58 | 0.23 |
| 30 | 1r4i_D_DT31_DT32 | BBw | BB02 | 71 | 0.27 |
| 31 | 1r4i_D_DT32_DC33 | BBB | BB00 | 50 | 0.29 |
| 32 | 1r4i_D_DC33_DT34 | BBw | BB02 | 35 | 0.30 |
| 33 | 1r4i_D_DT34_DG35 | BBB | BB00 | 69 | 0.28 |
| 34 | 1r4i_D_DG35_DG36 | BBB | BB00 | 25 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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