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Conformers: ABBIImiBZICOPNSYNN
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1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011r3g_A_DG1_DC2AAAAA00860.23 AA00
021r3g_A_DC2_DG3AAwAA01960.06 AA01
031r3g_A_DG3_DT4AAAAA00310.34 AA00
041r3g_A_DT4_DA5AAwAA01800.25 AA01
051r3g_A_DA5_GMU6AAAAA00870.11 AA00
061r3g_A_GMU6_DA7AAAAA00890.10 AA00
071r3g_A_DA7_DC8AAAAA00930.13 AA00
081r3g_A_DC8_DG9AAAAA00940.11 AA00
091r3g_A_DG9_DC10AAAAA00940.16 AA00
101r3g_B_DG11_DC12AAAAA00780.29 AA00
111r3g_B_DC12_DG13AAwAA01950.20 AA01
121r3g_B_DG13_DT14AAAAA00750.21 AA00
131r3g_B_DT14_DA15AAAAA00940.11 AA00
141r3g_B_DA15_GMU16AAAAA00910.14 AA00
151r3g_B_GMU16_DA17AAAAA00810.14 AA00
161r3g_B_DA17_DC18AAAAA00850.16 AA00
171r3g_B_DC18_DG19AAAAA00830.20 AA00
181r3g_B_DG19_DC20AAAAA00660.24 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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