Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of Heterodimeric Ecdsyone receptor DNA binding complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1r0n_C_DC1_DC2 | BBB | BB00 | 12 | 0.30 |
| 02 | 1r0n_C_DC2_DG3 | A-B | AB03 | 63 | 0.25 |
| 03 | 1r0n_C_DG3_DA4 | B-A | BA10 | 43 | 0.47 |
| 04 | 1r0n_C_DA4_DG5 | NAN | NANT | 0 | 0.54 |
| 05 | 1r0n_C_DG5_DG6 | NAN | NANT | 0 | 0.76 |
| 06 | 1r0n_C_DG6_DT7 | BBB | BB01 | 56 | 0.23 |
| 07 | 1r0n_C_DT7_DC8 | A-B | AB03 | 68 | 0.30 |
| 08 | 1r0n_C_DC8_DA9 | BB2 | BB07 | 43 | 0.40 |
| 09 | 1r0n_C_DA9_DA10 | BBB | BB01 | 90 | 0.19 |
| 10 | 1r0n_C_DA10_DT11 | BBB | BB01 | 90 | 0.18 |
| 11 | 1r0n_C_DT11_DG12 | BBB | BB00 | 62 | 0.29 |
| 12 | 1r0n_C_DG12_DA13 | BB2 | BB07 | 59 | 0.30 |
| 13 | 1r0n_C_DA13_DC14 | BBB | BB00 | 76 | 0.18 |
| 14 | 1r0n_C_DC14_DC15 | BBB | BB00 | 66 | 0.29 |
| 15 | 1r0n_C_DC15_DT16 | BBB | BB00 | 71 | 0.22 |
| 16 | 1r0n_C_DT16_DC17 | BBw | BB11 | 68 | 0.34 |
| 17 | 1r0n_C_DC17_DG18 | NAN | NANT | 0 | 0.61 |
| 18 | 1r0n_D_DC19_DC20 | B12 | BB04 | 40 | 0.44 |
| 19 | 1r0n_D_DC20_DG21 | BBB | BB00 | 72 | 0.37 |
| 20 | 1r0n_D_DG21_DA22 | BB2 | BB07 | 71 | 0.14 |
| 21 | 1r0n_D_DA22_DG23 | BBB | BB00 | 89 | 0.24 |
| 22 | 1r0n_D_DG23_DG24 | miB | BB12 | 67 | 0.42 |
| 23 | 1r0n_D_DG24_DT25 | BBw | BB16 | 66 | 0.52 |
| 24 | 1r0n_D_DT25_DC26 | BBB | BB00 | 86 | 0.26 |
| 25 | 1r0n_D_DC26_DA27 | BB2 | BB07 | 77 | 0.26 |
| 26 | 1r0n_D_DA27_DT28 | BBB | BB00 | 72 | 0.20 |
| 27 | 1r0n_D_DT28_DT29 | BBB | BB01 | 72 | 0.21 |
| 28 | 1r0n_D_DT29_DG30 | BBB | BB00 | 51 | 0.39 |
| 29 | 1r0n_D_DG30_DA31 | BB2 | BB07 | 81 | 0.27 |
| 30 | 1r0n_D_DA31_DC32 | BBB | BB00 | 81 | 0.24 |
| 31 | 1r0n_D_DC32_DC33 | B12 | BB05 | 62 | 0.33 |
| 32 | 1r0n_D_DC33_DT34 | BBB | BB00 | 30 | 0.41 |
| 33 | 1r0n_D_DT34_DC35 | BBB | BB00 | 94 | 0.19 |
| 34 | 1r0n_D_DC35_DG36 | BBB | BB00 | 42 | 0.46 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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