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Conformers: ABBIImiBZICOPNSYNN
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GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNA

Results of the assignment of 73 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011qrs_B_G2_G3AAAAA00850.15 AA00
021qrs_B_G3_G4AAAAA00880.18 AA00
031qrs_B_G4_G5AAwAA01640.20 AA01
041qrs_B_G5_U6AAAAA00730.21 AA00
051qrs_B_U6_A7NANNANT00.44 AA01
061qrs_B_A7_U8NANNANT00.38 OP11
071qrs_B_U8_C9NANNANT00.81 AA07
081qrs_B_C9_G10NANNANT01.11 AA07
091qrs_B_G10_C11AAAAA00320.30 AA00
101qrs_B_C11_C12AAwAA01950.17 AA01
111qrs_B_C12_A13AAAAA08630.46 AA08
121qrs_B_A13_A14AAuAA12630.28 AA12
131qrs_B_A14_G15AAAAA0090.53 AA00
141qrs_B_G15_C16NANNANT01.84 AB02
151qrs_B_C16_G18NANNANT01.59 OP13
161qrs_B_G18_G19NANNANT00.84 BB07
171qrs_B_G19_U20NANNANT00.51 OP15
181qrs_B_U20_A21NANNANT02.17 OP17
191qrs_B_A21_A22NANNANT00.69 IC07
201qrs_B_A22_G23AAAAA08480.50 AA08
211qrs_B_G23_G24AAAAA00880.16 AA00
221qrs_B_G24_C25AAAAA04900.21 AA04
231qrs_B_C25_A26AAAAA00730.35 AA00
241qrs_B_A26_C27AAAAA00670.28 AA00
251qrs_B_C27_C28AAAAA00790.22 AA00
261qrs_B_C28_G29NANNANT00.35 AA10
271qrs_B_G29_G30NANNANT00.40 AA03
281qrs_B_G30_A31AAAAA00380.31 AA00
291qrs_B_A31_U32AAAAA00920.19 AA00
301qrs_B_U32_U33AAAAA00400.34 AA00
311qrs_B_U33_C34OPNOP29360.58 OP29
321qrs_B_C34_U35NANNANT00.66 OP16
331qrs_B_U35_G36NANNANT01.95 OP01
341qrs_B_G36_A37NANNANT00.66 OP11
351qrs_B_A37_U38AAAAA00330.47 AA00
361qrs_B_U38_U39AAAAA00610.36 AA00
371qrs_B_U39_C40AAAAA00550.26 AA00
381qrs_B_C40_C41AAAAA00470.23 AA00
391qrs_B_C41_G42AAAAA08740.25 AA08
401qrs_B_G42_G43AAAAA00620.26 AA00
411qrs_B_G43_C44NANNANT00.75 BA09
421qrs_B_C44_A45NANNANT01.00 IC02
431qrs_B_A45_U46NANNANT01.40 OP16
441qrs_B_U46_U47NANNANT01.10 OP07
451qrs_B_U47_C48NANNANT00.54 AA12
461qrs_B_C48_C49NANNANT01.41 OP05
471qrs_B_C49_G50AAAAA00720.24 AA00
481qrs_B_G50_A51AAAAA00900.12 AA00
491qrs_B_A51_G52AAwAA01790.23 AA01
501qrs_B_G52_G53AAAAA08810.20 AA08
511qrs_B_G53_U54AAAAA00690.17 AA00
521qrs_B_U54_U55AAAAA00770.30 AA00
531qrs_B_U55_C56OPNOP04700.15 OP04
541qrs_B_C56_G57AAAAA08910.23 AA08
551qrs_B_G57_A58NANNANT00.71 AB04
561qrs_B_A58_A59NANNANT00.40 OP25
571qrs_B_A59_U60NANNANT00.48 AA05
581qrs_B_U60_C61NANNANT00.42 OP12
591qrs_B_C61_C62NANNANT00.29 AA03
601qrs_B_C62_U63AAwAA10210.20 AA10
611qrs_B_U63_C64AAAAA08520.39 AA08
621qrs_B_C64_G65AAwAA01670.23 AA01
631qrs_B_G65_U66AAAAA08700.20 AA08
641qrs_B_U66_A67AAAAA00950.10 AA00
651qrs_B_A67_C68AAAAA08800.22 AA08
661qrs_B_C68_C69AAAAA00730.12 AA00
671qrs_B_C69_C70AAAAA00570.22 AA00
681qrs_B_C70_C71AAAAA00700.19 AA00
691qrs_B_C71_A72NANNANT00.72 AA12
701qrs_B_A72_G73NANNANT00.67 OP31
711qrs_B_G73_C74NANNANT01.03 OP25
721qrs_B_C74_C75NANNANT00.96 OP31
731qrs_B_C75_A76AAAAA00180.39 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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