Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1qqa_M_DT699_DA700 | BBB | BB00 | 15 | 0.36 |
| 02 | 1qqa_M_DA700_DC701 | NAN | NANT | 0 | 0.66 |
| 03 | 1qqa_M_DC701_DG702 | NAN | NANT | 0 | 0.45 |
| 04 | 1qqa_M_DG702_DC703 | NAN | NANT | 0 | 0.30 |
| 05 | 1qqa_M_DC703_DA704 | NAN | NANT | 0 | 0.46 |
| 06 | 1qqa_M_DA704_DA705 | BB2 | BB07 | 10 | 0.23 |
| 07 | 1qqa_M_DA705_DG706 | B12 | BB04 | 64 | 0.30 |
| 08 | 1qqa_M_DG706_DC707 | B-A | BA08 | 47 | 0.38 |
| 09 | 1qqa_M_DC707_DG708 | NAN | NANT | 0 | 0.64 |
| 10 | 1qqa_M_DG708_DC709 | NAN | NANT | 0 | 0.21 |
| 11 | 1qqa_M_DC709_DT710 | NAN | NANT | 0 | 0.59 |
| 12 | 1qqa_M_DT710_DT711 | miB | BB15 | 46 | 0.36 |
| 13 | 1qqa_M_DT711_DG712 | BB2 | BB07 | 77 | 0.27 |
| 14 | 1qqa_M_DG712_DC713 | NAN | NANT | 0 | 0.50 |
| 15 | 1qqa_M_DC713_DG714 | BBw | BB02 | 22 | 0.39 |
| 16 | 1qqa_M_DG714_DT715 | BBB | BB00 | 22 | 0.33 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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