Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
STRUCTURE OF A TRANSCRIBING T7 RNA POLYMERASE INITIATION COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1qln_N_DT101_DA102 | BBB | BB00 | 19 | 0.67 |
| 02 | 1qln_N_DA102_DA103 | NAN | NANT | 0 | 0.54 |
| 03 | 1qln_N_DA103_DT104 | BBw | BB02 | 54 | 0.45 |
| 04 | 1qln_N_DT104_DA105 | BBB | BB00 | 72 | 0.32 |
| 05 | 1qln_N_DA105_DC106 | miB | BB15 | 54 | 0.21 |
| 06 | 1qln_N_DC106_DG107 | BB2 | BB07 | 54 | 0.19 |
| 07 | 1qln_N_DG107_DA108 | BBw | BB02 | 75 | 0.28 |
| 08 | 1qln_N_DA108_DC109 | BBw | BB02 | 49 | 0.31 |
| 09 | 1qln_N_DC109_DT110 | BBB | BB00 | 45 | 0.27 |
| 10 | 1qln_N_DT110_DC111 | BBw | BB02 | 56 | 0.28 |
| 11 | 1qln_N_DC111_DA112 | BBB | BB00 | 57 | 0.28 |
| 12 | 1qln_N_DA112_DC113 | BBB | BB00 | 45 | 0.25 |
| 13 | 1qln_N_DC113_DT114 | NAN | NANT | 0 | 1.11 |
| 14 | 1qln_R_GTP1_G2 | AAA | AA00 | 50 | 0.29 |
| 15 | 1qln_R_G2_G3 | AAA | AA00 | 84 | 0.14 |
| 16 | 1qln_T_DC1_DT2 | NAN | NANT | 0 | 1.39 |
| 17 | 1qln_T_DT2_DC3 | NAN | NANT | 0 | 0.45 |
| 18 | 1qln_T_DC3_DC4 | NAN | NANT | 0 | 0.33 |
| 19 | 1qln_T_DC4_DC5 | NAN | NANT | 0 | 1.00 |
| 20 | 1qln_T_DC5_DT6 | NAN | NANT | 0 | 1.06 |
| 21 | 1qln_T_DT6_DA7 | NAN | NANT | 0 | 1.06 |
| 22 | 1qln_T_DA7_DT8 | BBB | BB00 | 53 | 0.36 |
| 23 | 1qln_T_DT8_DA9 | BBB | BB00 | 33 | 0.49 |
| 24 | 1qln_T_DA9_DG10 | NAN | NANT | 0 | 0.98 |
| 25 | 1qln_T_DG10_DT11 | BBB | BB00 | 42 | 0.40 |
| 26 | 1qln_T_DT11_DG12 | BBB | BB00 | 66 | 0.40 |
| 27 | 1qln_T_DG12_DA13 | BBB | BB00 | 72 | 0.24 |
| 28 | 1qln_T_DA13_DG14 | BBB | BB00 | 63 | 0.19 |
| 29 | 1qln_T_DG14_DT15 | BBw | BB02 | 74 | 0.14 |
| 30 | 1qln_T_DT15_DC16 | BBw | BB02 | 67 | 0.22 |
| 31 | 1qln_T_DC16_DG17 | BBB | BB00 | 55 | 0.22 |
| 32 | 1qln_T_DG17_DT18 | BBw | BB02 | 64 | 0.24 |
| 33 | 1qln_T_DT18_DA19 | BBB | BB00 | 76 | 0.37 |
| 34 | 1qln_T_DA19_DT20 | BBw | BB02 | 65 | 0.21 |
| 35 | 1qln_T_DT20_DT21 | BBw | BB02 | 35 | 0.50 |
| 36 | 1qln_T_DT21_DA22 | BB2 | BB07 | 14 | 0.41 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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