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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF AN 18 BASE PAIR COPY CONTROL RELATED RNA DUPLEX

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011qcu_A_G1_G2AAAAA00970.08 AA00
021qcu_A_G2_G3AAAAA00890.13 AA00
031qcu_A_G3_G4AAAAA00960.14 AA00
041qcu_A_G4_G5AAAAA00920.12 AA00
051qcu_A_G5_G6AAAAA00950.08 AA00
061qcu_A_G6_G7AAAAA00960.08 AA00
071qcu_A_G7_G8AAAAA00960.07 AA00
081qcu_A_G8_G9AAAAA00880.13 AA00
091qcu_A_G9_G10AAAAA00930.14 AA00
101qcu_A_G10_G11AAAAA00900.13 AA00
111qcu_B_C12_C13AAAAA00980.10 AA00
121qcu_B_C13_C14AAAAA00910.13 AA00
131qcu_B_C14_C15AAAAA00940.13 AA00
141qcu_B_C15_C16AAAAA00900.12 AA00
151qcu_B_C16_C17AAAAA00940.09 AA00
161qcu_B_C17_C18AAAAA00930.10 AA00
171qcu_B_C18_C19AAAAA00940.09 AA00
181qcu_B_C19_C20AAAAA00890.14 AA00
191qcu_B_C20_C21AAAAA00920.14 AA00
201qcu_B_C21_C22AAAAA00910.14 AA00
211qcu_C_C101_C102AAAAA00980.10 AA00
221qcu_C_C102_C103AAAAA00910.13 AA00
231qcu_C_C103_C104AAAAA00950.13 AA00
241qcu_C_C104_C105AAAAA00930.13 AA00
251qcu_C_C105_C106AAAAA00950.10 AA00
261qcu_C_C106_C107AAAAA00960.11 AA00
271qcu_C_C107_C108AAAAA00960.10 AA00
281qcu_C_C108_C109AAAAA00900.13 AA00
291qcu_C_C109_C110AAAAA00910.15 AA00
301qcu_C_C110_C111AAAAA00900.15 AA00
311qcu_D_G112_G113AAAAA00960.09 AA00
321qcu_D_G113_G114AAAAA00900.13 AA00
331qcu_D_G114_G115AAAAA00950.13 AA00
341qcu_D_G115_G116AAAAA00900.12 AA00
351qcu_D_G116_G117AAAAA00930.08 AA00
361qcu_D_G117_G118AAAAA00930.08 AA00
371qcu_D_G118_G119AAAAA00940.07 AA00
381qcu_D_G119_G120AAAAA00880.14 AA00
391qcu_D_G120_G121AAAAA00940.14 AA00
401qcu_D_G121_G122AAAAA00910.12 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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