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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011qaj_C_DC1_DA2BBwBB16720.40 BB16
021qaj_C_DA2_DT3NANNANT00.30 BB17
031qaj_C_DT3_DG4NANNANT00.64 AB02
041qaj_C_DG4_DC5BBBBB00770.23 BB00
051qaj_C_DC5_DA6BB2BB07540.35 BB07
061qaj_C_DA6_DT7NANNANT00.52 AB02
071qaj_C_DT7_DG8B12BB04800.17 BB04
081qaj_D_DC1_DA2BBBBB00760.18 BB00
091qaj_D_DA2_DT3BBBBB00910.19 BB00
101qaj_D_DT3_DG4BB2BB07900.25 BB07
111qaj_D_DG4_DC5BBBBB00870.14 BB00
121qaj_D_DC5_DA6BB2BB07950.18 BB07
131qaj_D_DA6_DT7BBBBB00890.19 BB00
141qaj_D_DT7_DG8B12BB04920.14 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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