DNATCO v4.1: results

Crystal structure of a mutant of the sarcin/ricin domain from rat 28S rRNA

Results of the assignment of 89 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1q96_A_G2_G3	AAA	AA00	72	0.22	AA00
02	1q96_A_G3_U4	AAA	AA00	97	0.09	AA00
03	1q96_A_U4_G5	AAA	AA00	78	0.12	AA00
04	1q96_A_G5_C6	AAA	AA00	82	0.20	AA00
05	1q96_A_C6_U7	AAA	AA00	62	0.33	AA00
06	1q96_A_U7_C8	AAA	AA00	61	0.34	AA00
07	1q96_A_C8_A.A9	NAN	NANT	0	0.28	ZZ01
08	1q96_A_C8_A.B9	ZZZ	ZZ01	65	0.20	ZZ01
09	1q96_A_A.A9_G10	OPN	OP23	86	0.18	OP23
10	1q96_A_A.B9_G10	OPN	OP23	86	0.18	OP23
11	1q96_A_G10_U11	OPN	OP15	92	0.10	OP15
12	1q96_A_U11_A12	AAA	AA00	78	0.24	AA00
13	1q96_A_A12_U13	AAA	AA08	25	0.50	AA08
14	1q96_A_U13_G14	AAA	AA00	88	0.23	AA00
15	1q96_A_G14_A15	OPN	OP03	97	0.00	OP03
16	1q96_A_A15_G16	AAA	AA00	47	0.37	AA00
17	1q96_A_G16_A17	AAA	AA00	65	0.27	AA00
18	1q96_A_A17_A18	AAw	AA05	87	0.28	AA05
19	1q96_A_A18_G19	AAA	AA00	19	0.48	AA00
20	1q96_A_G19_A20	OPN	OP08	90	0.13	OP08
21	1q96_A_A20_A21	AAA	AA08	88	0.27	AA08
22	1q96_A_A21_C22	AAA	AA00	89	0.15	AA00
23	1q96_A_C22_C23	AAA	AA00	71	0.37	AA00
24	1q96_A_C23_G24	AAA	AA08	18	0.55	AA08
25	1q96_A_G24_C25	AAA	AA00	79	0.19	AA00
26	1q96_A_C25_A26	AAA	AA00	91	0.11	AA00
27	1q96_A_A26_C27	AAA	AA00	75	0.17	AA00
28	1q96_A_C27_C28	AAA	AA00	90	0.15	AA00
29	1q96_B_G2_G3	AAA	AA00	89	0.13	AA00
30	1q96_B_G3_U4	AAA	AA00	95	0.07	AA00
31	1q96_B_U4_G5	AAA	AA00	91	0.11	AA00
32	1q96_B_G5_C6	AAA	AA00	81	0.23	AA00
33	1q96_B_C6_U7	AAA	AA00	66	0.32	AA00
34	1q96_B_U7_C8	AAA	AA00	69	0.32	AA00
35	1q96_B_C8_A9	NAN	NANT	0	0.28	ZZ01
36	1q96_B_A9_G10	NAN	NANT	0	1.39	BB08
37	1q96_B_G10_U11	OPN	OP15	84	0.17	OP15
38	1q96_B_U11_A12	AAA	AA00	80	0.22	AA00
39	1q96_B_A12_U13	AAA	AA08	26	0.49	AA08
40	1q96_B_U13_G14	AAA	AA00	91	0.20	AA00
41	1q96_B_G14_A15	OPN	OP03	95	0.10	OP03
42	1q96_B_A15_G16	AAA	AA08	59	0.35	AA08
43	1q96_B_G16_A17	AAA	AA00	36	0.30	AA00
44	1q96_B_A17_A18	AAw	AA05	77	0.27	AA05
45	1q96_B_A18_G19	AAA	AA00	28	0.50	AA00
46	1q96_B_G19_A.A20	NAN	NANT	0	0.29	OP08
47	1q96_B_G19_A.B20	OPN	OP08	89	0.12	OP08
48	1q96_B_A.A20_A.A21	AAA	AA08	67	0.34	AA08
49	1q96_B_A.B20_A.B21	AAA	AA08	77	0.26	AA08
50	1q96_B_A.A21_C.A22	AAA	AA00	91	0.15	AA00
51	1q96_B_A.B21_C.B22	AAA	AA00	78	0.15	AA00
52	1q96_B_C.A22_C.A23	AAA	AA00	68	0.35	AA00
53	1q96_B_C.B22_C.B23	AAA	AA00	50	0.35	AA00
54	1q96_B_C.A23_G24	AAA	AA08	35	0.51	AA08
55	1q96_B_C.B23_G24	AAA	AA08	20	0.56	AA08
56	1q96_B_G24_C25	AAA	AA00	72	0.19	AA00
57	1q96_B_C25_A26	AAA	AA00	95	0.11	AA00
58	1q96_B_A26_C27	AAA	AA00	82	0.15	AA00
59	1q96_B_C27_C28	AAA	AA00	94	0.15	AA00
60	1q96_C_G2_G3	AAA	AA00	87	0.16	AA00
61	1q96_C_G3_U4	AAA	AA00	94	0.09	AA00
62	1q96_C_U4_G5	AAA	AA00	92	0.09	AA00
63	1q96_C_G5_C6	AAA	AA00	90	0.17	AA00
64	1q96_C_C6_U7	AAA	AA00	65	0.34	AA00
65	1q96_C_U7_C8	AAA	AA00	55	0.38	AA00
66	1q96_C_C8_A9	NAN	NANT	0	0.28	ZZ01
67	1q96_C_A9_G10	OPN	OP23	84	0.19	OP23
68	1q96_C_G10_U11	OPN	OP15	87	0.10	OP15
69	1q96_C_U11_A12	AAA	AA00	86	0.16	AA00
70	1q96_C_A12_U13	AAA	AA08	29	0.57	AA08
71	1q96_C_U13_G14	AAA	AA00	78	0.20	AA00
72	1q96_C_G14_A15	OPN	OP03	78	0.20	OP03
73	1q96_C_A15_G16	AAA	AA08	67	0.35	AA08
74	1q96_C_G16_A17	AAA	AA00	24	0.36	AA00
75	1q96_C_A17_A18	NAN	NANT	0	0.68	AA05
76	1q96_C_A18_G19	AAA	AA08	38	0.43	AA08
77	1q96_C_G19_A.A20	OPN	OP08	58	0.13	OP08
78	1q96_C_G19_A.B20	OPN	OP08	53	0.18	OP08
79	1q96_C_A.A20_A.A21	AAA	AA08	89	0.28	AA08
80	1q96_C_A.B20_A.B21	AAA	AA00	23	0.32	AA00
81	1q96_C_A.A21_C.A22	AAA	AA00	86	0.14	AA00
82	1q96_C_A.B21_C.B22	AAA	AA00	32	0.22	AA00
83	1q96_C_C.A22_C23	AAA	AA00	74	0.34	AA00
84	1q96_C_C.B22_C23	AAA	AA00	32	0.38	AA00
85	1q96_C_C23_G24	AAA	AA08	38	0.51	AA08
86	1q96_C_G24_C25	AAA	AA00	76	0.16	AA00
87	1q96_C_C25_A26	AAA	AA00	94	0.10	AA00
88	1q96_C_A26_C27	AAA	AA00	80	0.13	AA00
89	1q96_C_C27_C28	AAA	AA00	89	0.24	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 89 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible