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Conformers: ABBIImiBZICOPNSYNN
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Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011q2s_E_A25_G26AAAAA08600.41 AA08
021q2s_E_G26_C27AAAAA00880.12 AA00
031q2s_E_C27_A28AAAAA00670.23 AA00
041q2s_E_A28_C29AAwAA01660.15 AA01
051q2s_E_C29_G30AAAAA00810.24 AA00
061q2s_E_G30_G31AAwAA06960.15 AA06
071q2s_E_G31_C32NANNANT00.53 AA11
081q2s_E_C32_U33NANNANT00.55 OP20
091q2s_E_U35_A36NANNANT02.81 OP01
101q2s_E_A36_A37NANNANT01.29 OP16
111q2s_E_A37_A38NANNANT01.45 OP11
121q2s_E_A38_C39NANNANT00.74 OP01
131q2s_E_C39_C40AAwAA01690.23 AA01
141q2s_E_C40_G41AAAAA08750.17 AA08
151q2s_E_G41_U42AAAAA00740.27 AA00
161q2s_E_U42_G43AAAAA00930.14 AA00
171q2s_E_G43_C44AAAAA00940.15 AA00
181q2s_F_A25_G26NANNANT01.10 AA00
191q2s_F_G26_C27AAAAA00670.14 AA00
201q2s_F_C27_A28AAAAA00620.23 AA00
211q2s_F_A28_C29AAwAA10840.18 AA10
221q2s_F_C29_G30AAAAA00720.18 AA00
231q2s_F_G30_G31AAAAA00780.18 AA00
241q2s_F_G31_C32NANNANT00.51 AA01
251q2s_F_C32_U33NANNANT00.40 OP20
261q2s_F_U35_A36NANNANT01.16 OP13
271q2s_F_A36_A37NANNANT00.69 OPS1
281q2s_F_A37_A38NANNANT01.72 OP16
291q2s_F_A38_C39NANNANT02.52 OP03
301q2s_F_C39_C40AAAAA08710.17 AA08
311q2s_F_C40_G41AAwAA06830.20 AA06
321q2s_F_G41_U42AAAAA08470.30 AA08
331q2s_F_U42_G43AAAAA00960.14 AA00
341q2s_F_G43_C44AAAAA00870.18 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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