Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1q2r_E_A25_G26 | AAA | AA04 | 16 | 0.76 |
| 02 | 1q2r_E_G26_C27 | AAA | AA00 | 89 | 0.17 |
| 03 | 1q2r_E_C27_A28 | AAA | AA00 | 39 | 0.26 |
| 04 | 1q2r_E_A28_C29 | AAw | AA01 | 93 | 0.10 |
| 05 | 1q2r_E_C29_G30 | AAA | AA00 | 88 | 0.18 |
| 06 | 1q2r_E_G30_G31 | AAA | AA00 | 90 | 0.13 |
| 07 | 1q2r_E_G31_C32 | A-B | AB05 | 69 | 0.21 |
| 08 | 1q2r_E_C32_U33 | OPN | OP20 | 57 | 0.30 |
| 09 | 1q2r_E_U35_A36 | NAN | NANT | 0 | 2.29 |
| 10 | 1q2r_E_A36_A37 | NAN | NANT | 0 | 1.81 |
| 11 | 1q2r_E_A37_A38 | NAN | NANT | 0 | 1.18 |
| 12 | 1q2r_E_A38_C39 | OPN | OP01 | 77 | 0.64 |
| 13 | 1q2r_E_C39_C40 | AAA | AA00 | 94 | 0.12 |
| 14 | 1q2r_E_C40_G41 | AAA | AA00 | 93 | 0.18 |
| 15 | 1q2r_E_G41_U42 | AAA | AA00 | 91 | 0.17 |
| 16 | 1q2r_E_U42_G43 | AAA | AA00 | 96 | 0.10 |
| 17 | 1q2r_E_G43_C44 | AAA | AA00 | 87 | 0.18 |
| 18 | 1q2r_F_A25_G26 | SYN | AAS1 | 90 | 0.22 |
| 19 | 1q2r_F_G26_C27 | AAA | AA00 | 93 | 0.14 |
| 20 | 1q2r_F_C27_A28 | AAA | AA00 | 74 | 0.22 |
| 21 | 1q2r_F_A28_C29 | AAw | AA01 | 93 | 0.14 |
| 22 | 1q2r_F_C29_G30 | AAA | AA00 | 85 | 0.19 |
| 23 | 1q2r_F_G30_G31 | AAw | AA01 | 24 | 0.30 |
| 24 | 1q2r_F_G31_C32 | NAN | NANT | 0 | 0.51 |
| 25 | 1q2r_F_C32_U33 | NAN | NANT | 0 | 1.59 |
| 26 | 1q2r_F_U35_A36 | NAN | NANT | 0 | 1.48 |
| 27 | 1q2r_F_A36_A37 | NAN | NANT | 0 | 1.20 |
| 28 | 1q2r_F_A37_A38 | NAN | NANT | 0 | 1.86 |
| 29 | 1q2r_F_A38_C39 | OPN | OP01 | 45 | 0.62 |
| 30 | 1q2r_F_C39_C40 | AAA | AA00 | 92 | 0.12 |
| 31 | 1q2r_F_C40_G41 | AAw | AA01 | 53 | 0.24 |
| 32 | 1q2r_F_G41_U42 | AAA | AA03 | 81 | 0.21 |
| 33 | 1q2r_F_U42_G43 | AAA | AA00 | 94 | 0.10 |
| 34 | 1q2r_F_G43_C44 | AAA | AA00 | 98 | 0.15 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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