Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Ternary Structure of T4DAM with AdoHcy and DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1q0t_C_DA402_DC403 | NAN | NANT | 0 | 0.30 |
| 02 | 1q0t_C_DC403_DA404 | NAN | NANT | 0 | 0.54 |
| 03 | 1q0t_C_DA404_DG405 | NAN | NANT | 0 | 0.33 |
| 04 | 1q0t_C_DG405_DG406 | NAN | NANT | 0 | 0.56 |
| 05 | 1q0t_C_DG406_DA407 | NAN | NANT | 0 | 0.19 |
| 06 | 1q0t_C_DA407_DT408 | NAN | NANT | 0 | 0.25 |
| 07 | 1q0t_C_DT408_DC409 | NAN | NANT | 0 | 0.34 |
| 08 | 1q0t_C_DC409_DC410 | AAA | AA02 | 28 | 0.58 |
| 09 | 1q0t_C_DC410_DT411 | NAN | NANT | 0 | 0.25 |
| 10 | 1q0t_C_DT411_DG412 | NAN | NANT | 0 | 0.53 |
| 11 | 1q0t_C_DG412_DT413 | NAN | NANT | 0 | 0.49 |
| 12 | 1q0t_D_DA422_DC423 | BBw | BB02 | 76 | 0.25 |
| 13 | 1q0t_D_DC423_DA424 | BBB | BB00 | 51 | 0.34 |
| 14 | 1q0t_D_DA424_DG425 | BBB | BB00 | 19 | 0.38 |
| 15 | 1q0t_D_DG425_DG426 | NAN | NANT | 0 | 0.48 |
| 16 | 1q0t_D_DG426_DA427 | BBB | BB00 | 60 | 0.26 |
| 17 | 1q0t_D_DA427_DT428 | BBw | BB02 | 64 | 0.19 |
| 18 | 1q0t_D_DT428_DC429 | BBB | BB00 | 63 | 0.22 |
| 19 | 1q0t_D_DC429_DC430 | BBw | BB02 | 62 | 0.25 |
| 20 | 1q0t_D_DC430_DT431 | BBB | BB00 | 22 | 0.20 |
| 21 | 1q0t_D_DT431_DG432 | BB2 | BB07 | 50 | 0.20 |
| 22 | 1q0t_D_DG432_DT433 | BBw | BB02 | 38 | 0.22 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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