Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 75 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1pvq_C_DA1_DT2 | BBB | BB00 | 15 | 0.42 |
| 02 | 1pvq_C_DT2_DA3 | BB2 | BB07 | 45 | 0.32 |
| 03 | 1pvq_C_DA3_DA4 | NAN | NANT | 0 | 0.36 |
| 04 | 1pvq_C_DA4_DC5 | NAN | NANT | 0 | 0.44 |
| 05 | 1pvq_C_DC5_DT6 | NAN | NANT | 0 | 0.56 |
| 06 | 1pvq_C_DT6_DC7 | BBB | BB00 | 28 | 0.35 |
| 07 | 1pvq_C_DC7_DT8 | miB | BB15 | 61 | 0.28 |
| 08 | 1pvq_C_DT8_DA9 | B-A | BA17 | 74 | 0.28 |
| 09 | 1pvq_C_DA9_DT10 | BBB | BB00 | 14 | 0.43 |
| 10 | 1pvq_C_DT10_DA11 | BBB | BB01 | 50 | 0.18 |
| 11 | 1pvq_C_DA11_DT12 | BBB | BB01 | 33 | 0.23 |
| 12 | 1pvq_C_DT12_DA13 | NAN | NANT | 0 | 0.30 |
| 13 | 1pvq_C_DA13_DA14 | NAN | NANT | 0 | 0.72 |
| 14 | 1pvq_C_DA14_DT15 | BB2 | BB08 | 41 | 0.59 |
| 15 | 1pvq_C_DT15_DG.A16 | B12 | BB04 | 16 | 0.42 |
| 16 | 1pvq_C_DT15_DG.B16 | NAN | NANT | 0 | 0.47 |
| 17 | 1pvq_C_DG.A16_DT.B17 | NAN | NANT | 0 | 0.66 |
| 18 | 1pvq_C_DG.B16_DT.B17 | NAN | NANT | 0 | 0.77 |
| 19 | 1pvq_C_DT.B17_DA.B18 | NAN | NANT | 0 | 1.61 |
| 20 | 1pvq_C_DA.B18_DT.A19 | NAN | NANT | 0 | 1.12 |
| 21 | 1pvq_C_DA.B18_DT.B19 | NAN | NANT | 0 | 0.89 |
| 22 | 1pvq_C_DT.A19_DG20 | BBB | BB00 | 18 | 0.52 |
| 23 | 1pvq_C_DT.B19_DG20 | BBB | BB00 | 16 | 0.49 |
| 24 | 1pvq_C_DG20_DC21 | B-A | BA17 | 82 | 0.17 |
| 25 | 1pvq_C_DC21_DT22 | BBB | BB01 | 11 | 0.25 |
| 26 | 1pvq_C_DT22_DA23 | B-A | BA08 | 71 | 0.28 |
| 27 | 1pvq_C_DA23_DT24 | A-B | AB01 | 43 | 0.36 |
| 28 | 1pvq_C_DT24_DA25 | NAN | NANT | 0 | 0.43 |
| 29 | 1pvq_C_DA25_DT26 | NAN | NANT | 0 | 0.43 |
| 30 | 1pvq_C_DT26_DA27 | BB2 | BB07 | 43 | 0.29 |
| 31 | 1pvq_C_DA27_DG28 | B12 | BB04 | 54 | 0.31 |
| 32 | 1pvq_C_DG28_DA29 | miB | BB10 | 49 | 0.24 |
| 33 | 1pvq_C_DA29_DG30 | BBB | BB00 | 61 | 0.23 |
| 34 | 1pvq_C_DG30_DT31 | BBB | BB00 | 48 | 0.36 |
| 35 | 1pvq_C_DT31_DT32 | BBw | BB02 | 45 | 0.31 |
| 36 | 1pvq_C_DT32_DA33 | BBB | BB00 | 30 | 0.39 |
| 37 | 1pvq_C_DA33_DT34 | B12 | BB04 | 34 | 0.26 |
| 38 | 1pvq_D_DA1_DT2 | A-B | AB01 | 35 | 0.29 |
| 39 | 1pvq_D_DT2_DA3 | BB2 | BB07 | 13 | 0.31 |
| 40 | 1pvq_D_DA3_DA4 | BBB | BB00 | 23 | 0.37 |
| 41 | 1pvq_D_DA4_DC5 | NAN | NANT | 0 | 0.44 |
| 42 | 1pvq_D_DC5_DT6 | NAN | NANT | 0 | 0.52 |
| 43 | 1pvq_D_DT6_DC7 | miB | BB15 | 72 | 0.20 |
| 44 | 1pvq_D_DC7_DT8 | BBw | BB02 | 14 | 0.20 |
| 45 | 1pvq_D_DT8_DA9 | BBB | BB01 | 84 | 0.30 |
| 46 | 1pvq_D_DA9_DT10 | NAN | NANT | 0 | 0.37 |
| 47 | 1pvq_D_DT10_DA11 | B-A | BA08 | 49 | 0.42 |
| 48 | 1pvq_D_DA11_DT12 | NAN | NANT | 0 | 0.56 |
| 49 | 1pvq_D_DT12_DA13 | B12 | BB04 | 9 | 0.30 |
| 50 | 1pvq_D_DA13_DG14 | NAN | NANT | 0 | 0.28 |
| 51 | 1pvq_D_DG14_DC15 | NAN | NANT | 0 | 0.38 |
| 52 | 1pvq_D_DC15_DA.A16 | NAN | NANT | 0 | 0.54 |
| 53 | 1pvq_D_DC15_DA.B16 | NAN | NANT | 0 | 0.53 |
| 54 | 1pvq_D_DA.A16_DT.A17 | NAN | NANT | 0 | 0.54 |
| 55 | 1pvq_D_DA.B16_DT.B17 | NAN | NANT | 0 | 0.62 |
| 56 | 1pvq_D_DT.A17_DA.A18 | BBB | BB00 | 9 | 0.53 |
| 57 | 1pvq_D_DT.B17_DA.B18 | NAN | NANT | 0 | 0.72 |
| 58 | 1pvq_D_DA.A18_DC.A19 | NAN | NANT | 0 | 0.71 |
| 59 | 1pvq_D_DA.B18_DC.B19 | NAN | NANT | 0 | 0.66 |
| 60 | 1pvq_D_DC.A19_DA.A20 | NAN | NANT | 0 | 0.50 |
| 61 | 1pvq_D_DC.B19_DA.A20 | NAN | NANT | 0 | 0.48 |
| 62 | 1pvq_D_DA.A20_DT21 | NAN | NANT | 0 | 0.55 |
| 63 | 1pvq_D_DT21_DT22 | A-B | AB03 | 34 | 0.33 |
| 64 | 1pvq_D_DT22_DA23 | B-A | BA01 | 8 | 0.18 |
| 65 | 1pvq_D_DA23_DT24 | A-B | AB01 | 30 | 0.29 |
| 66 | 1pvq_D_DT24_DA25 | BBB | BB00 | 23 | 0.50 |
| 67 | 1pvq_D_DA25_DT26 | BBB | BB00 | 79 | 0.21 |
| 68 | 1pvq_D_DT26_DA27 | B12 | BB04 | 72 | 0.16 |
| 69 | 1pvq_D_DA27_DG28 | BBB | BB00 | 76 | 0.12 |
| 70 | 1pvq_D_DG28_DA29 | B12 | BB04 | 79 | 0.17 |
| 71 | 1pvq_D_DA29_DG30 | BBB | BB00 | 44 | 0.20 |
| 72 | 1pvq_D_DG30_DT31 | BBB | BB00 | 39 | 0.39 |
| 73 | 1pvq_D_DT31_DT32 | BBB | BB00 | 56 | 0.27 |
| 74 | 1pvq_D_DT32_DA33 | BB2 | BB07 | 57 | 0.19 |
| 75 | 1pvq_D_DA33_DT34 | NAN | NANT | 0 | 0.69 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|