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Conformers: ABBIImiBZICOPNSYNN
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STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011pbr_A_G1_G2AAAAA00840.18 AA00
021pbr_A_G2_C3AAAAA00860.21 AA00
031pbr_A_C3_G4AAAAA00680.30 AA00
041pbr_A_G4_U5AAAAA00550.36 AA00
051pbr_A_U5_C6AAAAA00600.34 AA00
061pbr_A_C6_A7AAAAA00330.43 AA00
071pbr_A_A7_C8AAAAA00450.44 AA00
081pbr_A_C8_A9AAAAA00860.20 AA00
091pbr_A_A9_C10AAAAA00850.25 AA00
101pbr_A_C10_C11AAAAA00860.29 AA00
111pbr_A_C11_U12AAAAA04330.51 AA04
121pbr_A_U12_U13OPNOP0970.37 OP09
131pbr_A_U13_C14NANNANT00.58 OP20
141pbr_A_C14_G15NANNANT00.32 ZZ1S
151pbr_A_G15_G16NANNANT00.56 AAS1
161pbr_A_G16_G17AAAAA08740.33 AA08
171pbr_A_G17_U18AAAAA00640.23 AA00
181pbr_A_U18_G19AAAAA00770.26 AA00
191pbr_A_G19_A20NANNANT00.99 OP04
201pbr_A_A20_A21NANNANT00.58 AB04
211pbr_A_A21_G22NANNANT00.67 AA08
221pbr_A_G22_U23AAAAA00340.37 AA00
231pbr_A_U23_C24AAAAA00820.23 AA00
241pbr_A_C24_G25AAAAA00600.29 AA00
251pbr_A_G25_C26NANNANT00.38 AB05
261pbr_A_C26_C27NANNANT01.29 AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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