DNATCO v4.1: results

Crystal structure of the tRNA domain of transfer-messenger RNA in complex with SmpB

Results of the assignment of 67 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1p6v_B_G13_A14	NAN	NANT	0	0.94	OP29
02	1p6v_B_A14_U15	NAN	NANT	0	0.81	AA05
03	1p6v_B_U15_U16	NAN	NANT	0	1.62	OP11
04	1p6v_B_U16_C17	NAN	NANT	0	1.39	OP13
05	1p6v_B_C17_G18	NAN	NANT	0	0.58	AA09
06	1p6v_B_G18_A19	NAN	NANT	0	1.24	AB02
07	1p6v_B_A19_C20	AAA	AA00	74	0.30	AA00
08	1p6v_B_C20_G21	AAA	AA00	82	0.14	AA00
09	1p6v_B_G21_G22	AAA	AA00	54	0.30	AA00
10	1p6v_B_G22_G23	AAw	AA01	83	0.22	AA01
11	1p6v_B_G23_G24	AAA	AA08	89	0.21	AA08
12	1p6v_B_G24_A25	AAA	AA00	63	0.33	AA00
13	1p6v_B_A25_C26	AAA	AA00	73	0.15	AA00
14	1p6v_B_C26_U27	AAA	AA00	76	0.16	AA00
15	1p6v_B_U27_U28	NAN	NANT	0	0.88	OP04
16	1p6v_B_U28_C29	NAN	NANT	0	1.98	AA11
17	1p6v_B_C29_G30	NAN	NANT	0	1.60	AA01
18	1p6v_B_G30_G31	NAN	NANT	0	0.40	AA05
19	1p6v_B_G31_U32	AAA	AA00	55	0.33	AA00
20	1p6v_B_U32_C33	AAw	AA01	70	0.23	AA01
21	1p6v_B_C33_C34	AAA	AA00	49	0.20	AA00
22	1p6v_B_C34_U35	AAA	AA00	69	0.29	AA00
23	1p6v_B_U35_C36	AAA	AA00	77	0.20	AA00
24	1p6v_B_C36_G37	AAA	AA00	79	0.14	AA00
25	1p6v_B_G37_G38	NAN	NANT	0	0.58	AB04
26	1p6v_B_G38_A39	NAN	NANT	0	1.13	IC07
27	1p6v_B_A39_C40	NAN	NANT	0	0.88	AB02
28	1p6v_B_C40_G41	NAN	NANT	0	1.83	OP05
29	1p6v_B_G41_C42	AAu	AA12	29	0.64	AA12
30	1p6v_B_C42_G43	AAw	AA01	83	0.34	AA01
31	1p6v_B_G43_G44	NAN	NANT	0	0.36	AA10
32	1p6v_B_G44_G45	AAA	AA08	53	0.25	AA08
33	1p6v_B_G45_U46	AAA	AA00	63	0.25	AA00
34	1p6v_B_U46_U47	AAA	AA08	73	0.37	AA08
35	1p6v_B_U47_C48	NAN	NANT	0	0.58	OP04
36	1p6v_B_C48_G49	AAA	AA08	35	0.55	AA08
37	1p6v_B_G49_A50	NAN	NANT	0	0.64	AA11
38	1p6v_B_A50_U51	NAN	NANT	0	1.14	OP05
39	1p6v_B_U51_U52	NAN	NANT	0	1.24	IC04
40	1p6v_B_U52_C53	NAN	NANT	0	0.51	OP12
41	1p6v_B_C53_C54	AAA	AA00	45	0.36	AA00
42	1p6v_B_C54_C55	AAA	AA00	35	0.34	AA00
43	1p6v_B_C55_G56	AAw	AA10	58	0.37	AA10
44	1p6v_B_G56_C57	AAw	AA01	27	0.43	AA01
45	1p6v_D_U16_C17	NAN	NANT	0	1.23	OP14
46	1p6v_D_C17_G18	NAN	NANT	0	0.63	AA08
47	1p6v_D_G18_A19	NAN	NANT	0	1.33	AB02
48	1p6v_D_A19_C20	AAA	AA00	32	0.42	AA00
49	1p6v_D_C20_G21	AAA	AA00	82	0.15	AA00
50	1p6v_D_G21_G22	AAA	AA00	53	0.30	AA00
51	1p6v_D_G22_G23	AAw	AA01	83	0.22	AA01
52	1p6v_D_G23_G24	AAA	AA08	88	0.21	AA08
53	1p6v_D_G24_A25	AAA	AA00	63	0.33	AA00
54	1p6v_D_A25_C26	AAA	AA00	72	0.16	AA00
55	1p6v_D_C26_U27	AAA	AA00	77	0.16	AA00
56	1p6v_D_U27_U28	NAN	NANT	0	0.88	OP04
57	1p6v_D_U28_C29	NAN	NANT	0	1.98	AA11
58	1p6v_D_C29_G30	NAN	NANT	0	1.60	AA01
59	1p6v_D_G30_G31	NAN	NANT	0	0.40	AA05
60	1p6v_D_G31_U32	AAA	AA00	52	0.33	AA00
61	1p6v_D_U32_C33	AAw	AA01	62	0.23	AA01
62	1p6v_D_C33_C34	AAA	AA00	42	0.21	AA00
63	1p6v_D_C34_U35	AAA	AA00	67	0.29	AA00
64	1p6v_D_U35_C36	AAA	AA00	73	0.20	AA00
65	1p6v_D_C36_G37	AAA	AA00	81	0.15	AA00
66	1p6v_D_G37_G38	NAN	NANT	0	0.48	AB03
67	1p6v_D_G38_A39	NAN	NANT	0	0.98	IC07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 67 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible