DNATCO v4.1: results

Solution Structure of HCV IRES Domain II (minimized average structure)

Results of the assignment of 76 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1p5p_A_G1_G2	NAN	NANT	0	0.45	AA08
02	1p5p_A_G2_C3	AAA	AA00	57	0.31	AA00
03	1p5p_A_C3_U4	AAA	AA00	39	0.29	AA00
04	1p5p_A_U4_G5	NAN	NANT	0	0.50	AB05
05	1p5p_A_G5_U6	NAN	NANT	0	0.91	OP14
06	1p5p_A_U6_G7	NAN	NANT	0	1.66	BA09
07	1p5p_A_G7_A8	AAA	AA08	23	0.31	AA08
08	1p5p_A_A8_G9	AAA	AA00	51	0.24	AA00
09	1p5p_A_G9_G10	AAA	AA08	28	0.29	AA08
10	1p5p_A_G10_A11	AAA	AA08	45	0.29	AA08
11	1p5p_A_A11_A12	AAA	AA08	19	0.48	AA08
12	1p5p_A_A12_C13	NAN	NANT	0	0.87	AA04
13	1p5p_A_C13_U14	NAN	NANT	0	1.38	OP19
14	1p5p_A_U14_A15	NAN	NANT	0	0.79	OP12
15	1p5p_A_A15_C16	AAA	AA08	70	0.23	AA08
16	1p5p_A_C16_U17	AAA	AA00	68	0.24	AA00
17	1p5p_A_U17_G18	AAA	AA04	65	0.27	AA04
18	1p5p_A_G18_U19	AAA	AA00	42	0.35	AA00
19	1p5p_A_U19_C20	AAA	AA00	82	0.16	AA00
20	1p5p_A_C20_U21	AAA	AA08	57	0.30	AA08
21	1p5p_A_U21_U22	AAA	AA00	56	0.20	AA00
22	1p5p_A_U22_C23	AAA	AA00	49	0.20	AA00
23	1p5p_A_C23_A24	AAA	AA08	43	0.38	AA08
24	1p5p_A_A24_C25	AAA	AA00	59	0.20	AA00
25	1p5p_A_C25_G26	NAN	NANT	0	0.41	AB2S
26	1p5p_A_G26_C27	NAN	NANT	0	0.71	AAS1
27	1p5p_A_C27_A28	AAw	AA01	51	0.24	AA01
28	1p5p_A_A28_G29	AAA	AA08	13	0.46	AA08
29	1p5p_A_G29_A30	NAN	NANT	0	0.46	OP08
30	1p5p_A_A30_A31	AAA	AA08	37	0.40	AA08
31	1p5p_A_A31_A32	AAA	AA00	23	0.34	AA00
32	1p5p_A_A32_G33	AAA	AA00	17	0.54	AA00
33	1p5p_A_G33_C34	AAA	AA00	69	0.22	AA00
34	1p5p_A_C34_G35	AAA	AA08	23	0.36	AA08
35	1p5p_A_G35_U36	AAA	AA08	65	0.28	AA08
36	1p5p_A_U36_C37	AAA	AA00	56	0.33	AA00
37	1p5p_A_C37_U38	AAA	AA00	11	0.61	AA00
38	1p5p_A_U38_A39	AAA	AA08	15	0.60	AA08
39	1p5p_A_A39_G40	NAN	NANT	0	1.46	AB05
40	1p5p_A_G40_C41	NAN	NANT	0	2.11	OP26
41	1p5p_A_C41_C42	AAA	AA08	14	0.65	AA08
42	1p5p_A_C42_A43	NAN	NANT	0	0.64	IC04
43	1p5p_A_A43_U44	NAN	NANT	0	1.57	BB08
44	1p5p_A_U44_G45	OPN	OP12	27	0.62	OP12
45	1p5p_A_G45_G46	AAA	AA00	48	0.25	AA00
46	1p5p_A_G46_C47	AAA	AA00	67	0.21	AA00
47	1p5p_A_C47_G48	AAA	AA04	79	0.20	AA04
48	1p5p_A_G48_U49	AAA	AA08	60	0.24	AA08
49	1p5p_A_U49_U50	AAA	AA00	19	0.45	AA00
50	1p5p_A_U50_A51	ZZZ	ZZ01	13	0.29	ZZ01
51	1p5p_A_A51_G52	NAN	NANT	0	0.46	OP23
52	1p5p_A_G52_U53	OPN	OP15	75	0.22	OP15
53	1p5p_A_U53_A54	AAA	AA00	11	0.44	AA00
54	1p5p_A_A54_U55	AAA	AA08	21	0.49	AA08
55	1p5p_A_U55_G56	AAA	AA00	31	0.37	AA00
56	1p5p_A_G56_A57	AAA	AA00	47	0.28	AA00
57	1p5p_A_A57_G58	AAA	AA08	50	0.28	AA08
58	1p5p_A_G58_U59	AAA	AA00	16	0.29	AA00
59	1p5p_A_U59_G60	AAA	AA08	39	0.39	AA08
60	1p5p_A_G60_U61	AAA	AA04	62	0.33	AA04
61	1p5p_A_U61_C62	AAA	AA00	42	0.32	AA00
62	1p5p_A_C62_G63	NAN	NANT	0	0.57	AB03
63	1p5p_A_G63_U64	NAN	NANT	0	0.81	OP20
64	1p5p_A_U64_G65	NAN	NANT	0	1.35	OP27
65	1p5p_A_G65_C66	AAA	AA08	27	0.36	AA08
66	1p5p_A_C66_A67	AAA	AA00	59	0.33	AA00
67	1p5p_A_A67_G68	AAA	AA00	63	0.32	AA00
68	1p5p_A_G68_C69	NAN	NANT	0	0.89	OP12
69	1p5p_A_C69_C70	AAA	AA00	43	0.23	AA00
70	1p5p_A_C70_U71	AAA	AA00	63	0.24	AA00
71	1p5p_A_U71_C72	AAA	AA00	42	0.28	AA00
72	1p5p_A_C72_C73	AAA	AA00	63	0.32	AA00
73	1p5p_A_C73_A74	AAA	AA00	41	0.34	AA00
74	1p5p_A_A74_G75	AAA	AA08	41	0.29	AA08
75	1p5p_A_G75_C76	AAA	AA04	59	0.33	AA04
76	1p5p_A_C76_C77	AAA	AA00	70	0.30	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 76 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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