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Conformers: ABBIImiBZICOPNSYNN
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Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011p3l_I_DA1_DT2B12BB04720.25 BB04
0021p3l_I_DT2_DC3BBwBB02670.25 BB02
0031p3l_I_DC3_DA4BBBBB00640.27 BB00
0041p3l_I_DA4_DA5BBBBB00920.17 BB00
0051p3l_I_DA5_DT6BBwBB02880.12 BB02
0061p3l_I_DT6_DA7BBBBB00600.33 BB00
0071p3l_I_DA7_DT8BBBBB00920.15 BB00
0081p3l_I_DT8_DC9BBBBB00690.21 BB00
0091p3l_I_DC9_DC10BBBBB00570.35 BB00
0101p3l_I_DC10_DA11BB2BB07500.20 BB07
0111p3l_I_DA11_DC12BBBBB00840.20 BB00
0121p3l_I_DC12_DC13BBBBB00690.35 BB00
0131p3l_I_DC13_DT14BBBBB00890.17 BB00
0141p3l_I_DT14_DG15BB2BB07650.27 BB07
0151p3l_I_DG15_DC16BBBBB00620.27 BB00
0161p3l_I_DC16_DA17BB2BB07680.34 BB07
0171p3l_I_DA17_DG18BBBBB00580.30 BB00
0181p3l_I_DG18_DA19BBBBB00650.22 BB00
0191p3l_I_DA19_DT20NANNANT00.71 BB04
0201p3l_I_DT20_DT21NANNANT00.83 BB07
0211p3l_I_DT21_DC22miBBB13400.43 BB13
0221p3l_I_DC22_DT23BBBBB00280.48 BB00
0231p3l_I_DT23_DA24BBBBB00320.44 BB00
0241p3l_I_DA24_DC25B12BB04810.19 BB04
0251p3l_I_DC25_DC26NANNANT00.40 BB02
0261p3l_I_DC26_DA27BB2BB07190.50 BB07
0271p3l_I_DA27_DA28NANNANT00.44 BB17
0281p3l_I_DA28_DA29NANNANT00.53 BB02
0291p3l_I_DA29_DA30BBBBB00670.42 BB00
0301p3l_I_DA30_DG31B12BB04760.19 BB04
0311p3l_I_DG31_DT32BBBBB00650.34 BB00
0321p3l_I_DT32_DG33BBBBB00970.13 BB00
0331p3l_I_DG33_DT34miBBB13520.40 BB13
0341p3l_I_DT34_DA35BBBBB00250.52 BB00
0351p3l_I_DA35_DT36BBBBB00780.28 BB00
0361p3l_I_DT36_DT37BBBBB00760.32 BB00
0371p3l_I_DT37_DT38BBBBB00930.21 BB00
0381p3l_I_DT38_DG39BB2BB07800.28 BB07
0391p3l_I_DG39_DG40BBBBB00840.24 BB00
0401p3l_I_DG40_DA41BB2BB07920.29 BB07
0411p3l_I_DA41_DA42BBBBB00780.19 BB00
0421p3l_I_DA42_DA43BBBBB00760.23 BB00
0431p3l_I_DA43_DC44BBBBB00980.13 BB00
0441p3l_I_DC44_DT45BBBBB00630.31 BB00
0451p3l_I_DT45_DG46B12BB04890.19 BB04
0461p3l_I_DG46_DC47BBBBB00810.22 BB00
0471p3l_I_DC47_DT48BBwBB02500.48 BB02
0481p3l_I_DT48_DC49BBBBB00380.59 BB00
0491p3l_I_DC49_DC50BB2BB07640.21 BB07
0501p3l_I_DC50_DA51BBBBB00650.33 BB00
0511p3l_I_DA51_DT52BBBBB00880.19 BB00
0521p3l_I_DT52_DC53BBBBB00880.17 BB00
0531p3l_I_DC53_DA54BBBBB00720.28 BB00
0541p3l_I_DA54_DA55B12BB04850.21 BB04
0551p3l_I_DA55_DA56B12BB04810.21 BB04
0561p3l_I_DA56_DA57BBBBB00850.20 BB00
0571p3l_I_DA57_DG58B12BB04810.32 BB04
0581p3l_I_DG58_DG59BB2BB07820.33 BB07
0591p3l_I_DG59_DC60B12BB04870.21 BB04
0601p3l_I_DC60_DA61B12BB04830.23 BB04
0611p3l_I_DA61_DT62BBBBB00680.24 BB00
0621p3l_I_DT62_DG63B12BB04800.35 BB04
0631p3l_I_DG63_DT64B12BB04860.18 BB04
0641p3l_I_DT64_DT65BBBBB00900.17 BB00
0651p3l_I_DT65_DC66BBBBB00810.14 BB00
0661p3l_I_DC66_DA67BB2BB07910.28 BB07
0671p3l_I_DA67_DG68BBBBB00790.29 BB00
0681p3l_I_DG68_DC69BB2BB07850.30 BB07
0691p3l_I_DC69_DG70BBBBB00680.41 BB00
0701p3l_I_DG70_DG71BB2BB07850.22 BB07
0711p3l_I_DG71_DA72BBBBB00890.23 BB00
0721p3l_I_DA72_DA73BBBBB00940.15 BB00
0731p3l_I_DA73_DT74BBBBB00780.24 BB00
0741p3l_I_DT74_DT75BBBBB00940.15 BB00
0751p3l_I_DT75_DC76BBBBB00620.31 BB00
0761p3l_I_DC76_DC77BB2BB07900.21 BB07
0771p3l_I_DC77_DG78B12BB04630.43 BB04
0781p3l_I_DG78_DC79BB2BB07730.27 BB07
0791p3l_I_DC79_DT80BBBBB00830.18 BB00
0801p3l_I_DT80_DG81BBBBB00810.18 BB00
0811p3l_I_DG81_DA82B12BB04120.29 BB04
0821p3l_I_DA82_DA83BBBBB00950.12 BB00
0831p3l_I_DA83_DC84BBBBB00870.19 BB00
0841p3l_I_DC84_DA85B12BB04960.10 BB04
0851p3l_I_DA85_DT86BBBBB00810.16 BB00
0861p3l_I_DT86_DG87BBBBB00810.19 BB00
0871p3l_I_DG87_DC88BB2BB07820.32 BB07
0881p3l_I_DC88_DC89B12BB04650.52 BB04
0891p3l_I_DC89_DT90BB2BB07620.29 BB07
0901p3l_I_DT90_DT91BBBBB00820.15 BB00
0911p3l_I_DT91_DT92BBBBB00880.17 BB00
0921p3l_I_DT92_DT93B12BB04720.25 BB04
0931p3l_I_DT93_DG94BBwBB02750.18 BB02
0941p3l_I_DG94_DA95BBBBB00740.20 BB00
0951p3l_I_DA95_DT96BBBBB00640.34 BB00
0961p3l_I_DT96_DG97B12BB04690.24 BB04
0971p3l_I_DG97_DG98BBBBB00890.20 BB00
0981p3l_I_DG98_DA99BB2BB07840.35 BB07
0991p3l_I_DA99_DG100BBBBB00780.34 BB00
1001p3l_I_DG100_DC101BB2BB07880.20 BB07
1011p3l_I_DC101_DA102BBBBB00930.20 BB00
1021p3l_I_DA102_DG103B12BB04900.21 BB04
1031p3l_I_DG103_DT104BBBBB00830.26 BB00
1041p3l_I_DT104_DT105B12BB04840.21 BB04
1051p3l_I_DT105_DT106BBBBB00910.22 BB00
1061p3l_I_DT106_DC107BBBBB00880.20 BB00
1071p3l_I_DC107_DC108BB2BB07520.33 BB07
1081p3l_I_DC108_DA109BB2BB07890.20 BB07
1091p3l_I_DA109_DA110BBBBB00870.11 BB00
1101p3l_I_DA110_DA111B12BB04790.09 BB04
1111p3l_I_DA111_DT112BBBBB00780.27 BB00
1121p3l_I_DT112_DA113BBBBB00700.28 BB00
1131p3l_I_DA113_DC114miBBB13620.30 BB13
1141p3l_I_DC114_DA115BBBBB00560.49 BB00
1151p3l_I_DA115_DC116BBBBB00860.27 BB00
1161p3l_I_DC116_DT117BBBBB00730.32 BB00
1171p3l_I_DT117_DT118BBBBB00540.30 BB00
1181p3l_I_DT118_DT119BBBBB00370.44 BB00
1191p3l_I_DT119_DT120NANNANT00.49 AB02
1201p3l_I_DT120_DG121BB2BB07530.31 BB07
1211p3l_I_DG121_DG122BBBBB00780.26 BB00
1221p3l_I_DG122_DT123BBBBB00940.17 BB00
1231p3l_I_DT123_DA124BBBBB00850.18 BB00
1241p3l_I_DA124_DG125BBBBB00820.23 BB00
1251p3l_I_DG125_DA126BBBBB00470.37 BB00
1261p3l_I_DA126_DA127BBBBB00670.32 BB00
1271p3l_I_DA127_DT128BBBBB00770.28 BB00
1281p3l_I_DT128_DC129BBBBB00810.28 BB00
1291p3l_I_DC129_DT130BBBBB00810.28 BB00
1301p3l_I_DT130_DG131BB2BB07830.27 BB07
1311p3l_I_DG131_DC132BBBBB00790.22 BB00
1321p3l_I_DC132_DA133BB2BB07820.23 BB07
1331p3l_I_DA133_DG134BBwBB11570.39 BB11
1341p3l_I_DG134_DG135BBBBB00490.34 BB00
1351p3l_I_DG135_DT136BBBBB00660.37 BB00
1361p3l_I_DT136_DG137BBBBB00810.21 BB00
1371p3l_I_DG137_DG138BBBBB00900.11 BB00
1381p3l_I_DG138_DA139BBBBB00560.38 BB00
1391p3l_I_DA139_DT140BBBBB00720.27 BB00
1401p3l_I_DT140_DA141BB2BB07770.23 BB07
1411p3l_I_DA141_DT142BBBBB00930.19 BB00
1421p3l_I_DT142_DT143BBBBB00860.16 BB00
1431p3l_I_DT143_DG144BBBBB00910.22 BB00
1441p3l_I_DG144_DA145BBBBB00830.29 BB00
1451p3l_I_DA145_DT146BBBBB00950.16 BB00
1461p3l_J_DA147_DT148BBBBB00290.38 BB00
1471p3l_J_DT148_DC149miBBB13840.34 BB13
1481p3l_J_DC149_DA150NANNANT00.66 AB02
1491p3l_J_DA150_DA151BBBBB00780.27 BB00
1501p3l_J_DA151_DT152BBwBB02460.29 BB02
1511p3l_J_DT152_DA153BBBBB00770.23 BB00
1521p3l_J_DA153_DT154BBBBB00910.16 BB00
1531p3l_J_DT154_DC155BBwBB02890.17 BB02
1541p3l_J_DC155_DC156BBBBB00730.25 BB00
1551p3l_J_DC156_DA157B12BB04460.23 BB04
1561p3l_J_DA157_DC158BBBBB00780.20 BB00
1571p3l_J_DC158_DC159BBBBB00820.25 BB00
1581p3l_J_DC159_DT160BBBBB00810.18 BB00
1591p3l_J_DT160_DG161BB2BB07910.20 BB07
1601p3l_J_DG161_DC162BBBBB00780.15 BB00
1611p3l_J_DC162_DA163BB2BB07850.34 BB07
1621p3l_J_DA163_DG164BBBBB00690.25 BB00
1631p3l_J_DG164_DA165BBBBB00780.28 BB00
1641p3l_J_DA165_DT166BBBBB00830.24 BB00
1651p3l_J_DT166_DT167BBBBB00640.30 BB00
1661p3l_J_DT167_DC168BBBBB00570.34 BB00
1671p3l_J_DC168_DT169BBBBB00460.32 BB00
1681p3l_J_DT169_DA170BBBBB00920.14 BB00
1691p3l_J_DA170_DC171BBBBB00750.37 BB00
1701p3l_J_DC171_DC172BBBBB00920.19 BB00
1711p3l_J_DC172_DA173BB2BB07730.36 BB07
1721p3l_J_DA173_DA174BBBBB00820.22 BB00
1731p3l_J_DA174_DA175BBwBB02570.37 BB02
1741p3l_J_DA175_DA176BBBBB00530.38 BB00
1751p3l_J_DA176_DG177B12BB04770.15 BB04
1761p3l_J_DG177_DT178BBBBB00850.22 BB00
1771p3l_J_DT178_DG179BBBBB00920.19 BB00
1781p3l_J_DG179_DT180BBBBB00870.28 BB00
1791p3l_J_DT180_DA181BBBBB00790.22 BB00
1801p3l_J_DA181_DT182BBBBB00630.32 BB00
1811p3l_J_DT182_DT183BBBBB00690.36 BB00
1821p3l_J_DT183_DT184BBBBB00910.11 BB00
1831p3l_J_DT184_DG185BB2BB07800.29 BB07
1841p3l_J_DG185_DG186BBBBB00670.30 BB00
1851p3l_J_DG186_DA187BB2BB07910.26 BB07
1861p3l_J_DA187_DA188BBBBB00940.10 BB00
1871p3l_J_DA188_DA189BBBBB00720.24 BB00
1881p3l_J_DA189_DC190BBBBB00890.22 BB00
1891p3l_J_DC190_DT191BBBBB00750.27 BB00
1901p3l_J_DT191_DG192BB2BB07660.25 BB07
1911p3l_J_DG192_DC193BBBBB00870.22 BB00
1921p3l_J_DC193_DT194BB2BB07830.27 BB07
1931p3l_J_DT194_DC195BBBBB00450.34 BB00
1941p3l_J_DC195_DC196BB2BB07490.27 BB07
1951p3l_J_DC196_DA197BBBBB00910.19 BB00
1961p3l_J_DA197_DT198miBBB15600.23 BB15
1971p3l_J_DT198_DC199B12BB04630.19 BB04
1981p3l_J_DC199_DA200BBBBB00690.31 BB00
1991p3l_J_DA200_DA201BBBBB00880.19 BB00
2001p3l_J_DA201_DA202B12BB04780.14 BB04
2011p3l_J_DA202_DA203BBBBB00760.22 BB00
2021p3l_J_DA203_DG204BB2BB07820.10 BB07
2031p3l_J_DG204_DG205BB2BB07850.20 BB07
2041p3l_J_DG205_DC206BBBBB00840.22 BB00
2051p3l_J_DC206_DA207B12BB04850.20 BB04
2061p3l_J_DA207_DT208BBBBB00970.11 BB00
2071p3l_J_DT208_DG209BBBBB00620.26 BB00
2081p3l_J_DG209_DT210BBBBB00720.30 BB00
2091p3l_J_DT210_DT211B12BB04820.28 BB04
2101p3l_J_DT211_DC212BBBBB00750.24 BB00
2111p3l_J_DC212_DA213B12BB04710.20 BB04
2121p3l_J_DA213_DG214B12BB04540.22 BB04
2131p3l_J_DG214_DC215BBBBB00890.18 BB00
2141p3l_J_DC215_DG216BB2BB07890.28 BB07
2151p3l_J_DG216_DG217BBBBB00730.25 BB00
2161p3l_J_DG217_DA218B12BB04540.28 BB04
2171p3l_J_DA218_DA219BBBBB00960.16 BB00
2181p3l_J_DA219_DT220BBBBB00830.23 BB00
2191p3l_J_DT220_DT221B12BB04900.27 BB04
2201p3l_J_DT221_DC222BBBBB00960.17 BB00
2211p3l_J_DC222_DC223BBBBB00840.17 BB00
2221p3l_J_DC223_DG224BB2BB07910.29 BB07
2231p3l_J_DG224_DC225BBBBB00870.20 BB00
2241p3l_J_DC225_DT226BB2BB07740.24 BB07
2251p3l_J_DT226_DG227BBwBB11820.32 BB11
2261p3l_J_DG227_DA228BBBBB00830.29 BB00
2271p3l_J_DA228_DA229B12BB04180.11 BB04
2281p3l_J_DA229_DC230BBBBB00750.26 BB00
2291p3l_J_DC230_DA231B12BB04330.47 BB04
2301p3l_J_DA231_DT232BBBBB00290.45 BB00
2311p3l_J_DT232_DG233BBBBB00390.23 BB00
2321p3l_J_DG233_DC234BBBBB00590.43 BB00
2331p3l_J_DC234_DC235BB2BB07710.15 BB07
2341p3l_J_DC235_DT236BBBBB00620.33 BB00
2351p3l_J_DT236_DT237BBBBB00730.24 BB00
2361p3l_J_DT237_DT238BBBBB00900.16 BB00
2371p3l_J_DT238_DT239BBBBB00870.17 BB00
2381p3l_J_DT239_DG240B12BB04670.36 BB04
2391p3l_J_DG240_DA241B12BB04790.25 BB04
2401p3l_J_DA241_DT242BBBBB00710.34 BB00
2411p3l_J_DT242_DG243BBwBB11660.39 BB11
2421p3l_J_DG243_DG244BBBBB00540.38 BB00
2431p3l_J_DG244_DA245BB2BB07880.21 BB07
2441p3l_J_DA245_DG246B12BB05400.48 BB05
2451p3l_J_DG246_DC247BB2BB07370.31 BB07
2461p3l_J_DC247_DA248NANNANT00.24 BB03
2471p3l_J_DA248_DG249B12BB04640.38 BB04
2481p3l_J_DG249_DT250BBBBB00870.19 BB00
2491p3l_J_DT250_DT251BBBBB00810.25 BB00
2501p3l_J_DT251_DT252BBBBB00840.17 BB00
2511p3l_J_DT252_DC253BBBBB00880.29 BB00
2521p3l_J_DC253_DC254BB2BB07640.22 BB07
2531p3l_J_DC254_DA255BB2BB07780.21 BB07
2541p3l_J_DA255_DA256BBBBB00790.17 BB00
2551p3l_J_DA256_DA257B12BB04870.11 BB04
2561p3l_J_DA257_DT258NANNANT00.51 BB03
2571p3l_J_DT258_DA259BBBBB00440.56 BB00
2581p3l_J_DA259_DC260BBBBB00760.24 BB00
2591p3l_J_DC260_DA261BBBBB00600.31 BB00
2601p3l_J_DA261_DC262BBwBB02370.39 BB02
2611p3l_J_DC262_DT263BBBBB00690.28 BB00
2621p3l_J_DT263_DT264BBBBB00610.27 BB00
2631p3l_J_DT264_DT265miBBB10610.47 BB10
2641p3l_J_DT265_DT266BBBBB00780.27 BB00
2651p3l_J_DT266_DG267B12BB04540.35 BB04
2661p3l_J_DG267_DG268BBwBB02880.29 BB02
2671p3l_J_DG268_DT269BBBBB00650.26 BB00
2681p3l_J_DT269_DA270NANNANT00.37 BB04
2691p3l_J_DA270_DG271BBBBB00270.22 BB00
2701p3l_J_DG271_DA272B12BB04140.48 BB04
2711p3l_J_DA272_DA273BBBBB00180.46 BB00
2721p3l_J_DA273_DT274NANNANT00.42 AB02
2731p3l_J_DT274_DC275NANNANT00.50 BB00
2741p3l_J_DC275_DT276BBBBB00900.19 BB00
2751p3l_J_DT276_DG277BB2BB07810.24 BB07
2761p3l_J_DG277_DC278BBBBB00790.19 BB00
2771p3l_J_DC278_DA279BB2BB07940.21 BB07
2781p3l_J_DA279_DG280BBBBB00740.29 BB00
2791p3l_J_DG280_DG281B12BB04680.24 BB04
2801p3l_J_DG281_DT282BBBBB00470.39 BB00
2811p3l_J_DT282_DG283BBBBB00880.18 BB00
2821p3l_J_DG283_DG284BBBBB00690.27 BB00
2831p3l_J_DG284_DA285B12BB04700.31 BB04
2841p3l_J_DA285_DT286BBBBB00760.26 BB00
2851p3l_J_DT286_DA287miBBB12770.34 BB12
2861p3l_J_DA287_DT288BBwBB16860.35 BB16
2871p3l_J_DT288_DT289BBwBB02810.23 BB02
2881p3l_J_DT289_DG290BBBBB00500.30 BB00
2891p3l_J_DG290_DA291BBBBB00750.29 BB00
2901p3l_J_DA291_DT292BBBBB00940.14 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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