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Conformers: ABBIImiBZICOPNSYNN
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Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011p3k_I_DA1_DT2BBBBB00120.44 BB00
0021p3k_I_DT2_DC3BBBBB00770.28 BB00
0031p3k_I_DC3_DA4BBBBB00470.27 BB00
0041p3k_I_DA4_DA5B12BB04530.15 BB04
0051p3k_I_DA5_DT6BBwBB02820.16 BB02
0061p3k_I_DT6_DA7B12BB04560.29 BB04
0071p3k_I_DA7_DT8BBBBB00660.35 BB00
0081p3k_I_DT8_DC9BBBBB00710.30 BB00
0091p3k_I_DC9_DC10BBBBB00270.38 BB00
0101p3k_I_DC10_DA11BB2BB07490.17 BB07
0111p3k_I_DA11_DC12BBBBB00850.26 BB00
0121p3k_I_DC12_DC13BBBBB00560.32 BB00
0131p3k_I_DC13_DT14BBBBB00840.15 BB00
0141p3k_I_DT14_DG15miBBB10390.65 BB10
0151p3k_I_DG15_DC16BBBBB00640.26 BB00
0161p3k_I_DC16_DA17B12BB04460.36 BB04
0171p3k_I_DA17_DG18BBBBB00530.33 BB00
0181p3k_I_DG18_DA19BBBBB00900.25 BB00
0191p3k_I_DA19_DT20BBBBB00790.18 BB00
0201p3k_I_DT20_DT21BBBBB00770.29 BB00
0211p3k_I_DT21_DC22NANNANT00.30 BB13
0221p3k_I_DC22_DT23BBBBB00180.59 BB00
0231p3k_I_DT23_DA24BBBBB00500.28 BB00
0241p3k_I_DA24_DC25BBBBB00670.35 BB00
0251p3k_I_DC25_DC26BBwBB02390.29 BB02
0261p3k_I_DC26_DA27BB2BB07260.35 BB07
0271p3k_I_DA27_DA28B12BB04350.43 BB04
0281p3k_I_DA28_DA29BB2BB07390.47 BB07
0291p3k_I_DA29_DA30BB2BB07510.26 BB07
0301p3k_I_DA30_DG31BBBBB00840.26 BB00
0311p3k_I_DG31_DT32BBBBB00830.29 BB00
0321p3k_I_DT32_DG33BBBBB00930.16 BB00
0331p3k_I_DG33_DT34miBBB13690.33 BB13
0341p3k_I_DT34_DA35BBBBB00140.52 BB00
0351p3k_I_DA35_DT36BBBBB00830.25 BB00
0361p3k_I_DT36_DT37BBBBB00660.39 BB00
0371p3k_I_DT37_DT38BBBBB00920.23 BB00
0381p3k_I_DT38_DG39BB2BB07810.29 BB07
0391p3k_I_DG39_DG40BBBBB00820.27 BB00
0401p3k_I_DG40_DA41BB2BB07950.20 BB07
0411p3k_I_DA41_DA42BBBBB00600.27 BB00
0421p3k_I_DA42_DA43B12BB04830.27 BB04
0431p3k_I_DA43_DC44BBBBB00640.34 BB00
0441p3k_I_DC44_DT45BBBBB00210.43 BB00
0451p3k_I_DT45_DG46B12BB04770.26 BB04
0461p3k_I_DG46_DC47BBBBB00810.19 BB00
0471p3k_I_DC47_DT48NANNANT00.60 BB08
0481p3k_I_DT48_DC49BBwBB16780.26 BB16
0491p3k_I_DC49_DC50BB2BB07440.23 BB07
0501p3k_I_DC50_DA51B12BB04920.17 BB04
0511p3k_I_DA51_DT52BBBBB00940.13 BB00
0521p3k_I_DT52_DC53BBBBB00940.15 BB00
0531p3k_I_DC53_DA54B12BB04400.41 BB04
0541p3k_I_DA54_DA55B12BB04120.46 BB04
0551p3k_I_DA55_DA56BB2BB07850.20 BB07
0561p3k_I_DA56_DA57BBBBB00710.30 BB00
0571p3k_I_DA57_DG58B12BB04710.29 BB04
0581p3k_I_DG58_DG59NANNANT00.70 BB13
0591p3k_I_DG59_DC60BBwBB16650.41 BB16
0601p3k_I_DC60_DA61B12BB04810.30 BB04
0611p3k_I_DA61_DT62BBBBB00810.20 BB00
0621p3k_I_DT62_DG63BBBBB00570.39 BB00
0631p3k_I_DG63_DT64BBBBB00790.35 BB00
0641p3k_I_DT64_DT65BBBBB00940.13 BB00
0651p3k_I_DT65_DC66BBBBB00870.18 BB00
0661p3k_I_DC66_DA67BB2BB07690.21 BB07
0671p3k_I_DA67_DG68BBBBB00620.26 BB00
0681p3k_I_DG68_DC69BB2BB07590.32 BB07
0691p3k_I_DC69_DG70B12BB04250.50 BB04
0701p3k_I_DG70_DG71B12BB04870.20 BB04
0711p3k_I_DG71_DA72BBBBB00800.24 BB00
0721p3k_I_DA72_DA73BBBBB00920.19 BB00
0731p3k_I_DA73_DT74BBBBB00560.35 BB00
0741p3k_I_DT74_DT75BBBBB00930.17 BB00
0751p3k_I_DT75_DC76B12BB04840.24 BB04
0761p3k_I_DC76_DC77B12BB04710.21 BB04
0771p3k_I_DC77_DG78B12BB04740.36 BB04
0781p3k_I_DG78_DC79BB2BB07530.23 BB07
0791p3k_I_DC79_DT80B12BB04910.24 BB04
0801p3k_I_DT80_DG81B12BB04850.16 BB04
0811p3k_I_DG81_DA82BBwBB02600.33 BB02
0821p3k_I_DA82_DA83BBBBB00410.25 BB00
0831p3k_I_DA83_DC84BBBBB00900.16 BB00
0841p3k_I_DC84_DA85B12BB04970.15 BB04
0851p3k_I_DA85_DT86BBBBB00930.10 BB00
0861p3k_I_DT86_DG87B12BB04670.32 BB04
0871p3k_I_DG87_DC88BB2BB07560.44 BB07
0881p3k_I_DC88_DC89BBBBB00310.33 BB00
0891p3k_I_DC89_DT90BB2BB07640.25 BB07
0901p3k_I_DT90_DT91BBBBB00880.11 BB00
0911p3k_I_DT91_DT92BBBBB00840.15 BB00
0921p3k_I_DT92_DT93BBBBB00700.24 BB00
0931p3k_I_DT93_DG94BBwBB02710.16 BB02
0941p3k_I_DG94_DA95BBBBB00520.30 BB00
0951p3k_I_DA95_DT96B12BB04790.32 BB04
0961p3k_I_DT96_DG97B12BB04720.33 BB04
0971p3k_I_DG97_DG98B12BB04630.30 BB04
0981p3k_I_DG98_DA99BB2BB07580.28 BB07
0991p3k_I_DA99_DG100NANNANT00.44 BB02
1001p3k_I_DG100_DC101BB2BB07280.27 BB07
1011p3k_I_DC101_DA102BBBBB00710.32 BB00
1021p3k_I_DA102_DG103B12BB04820.20 BB04
1031p3k_I_DG103_DT104BBBBB00740.29 BB00
1041p3k_I_DT104_DT105BBBBB00860.18 BB00
1051p3k_I_DT105_DT106BBBBB00790.22 BB00
1061p3k_I_DT106_DC107BBBBB00740.21 BB00
1071p3k_I_DC107_DC108BB2BB07750.33 BB07
1081p3k_I_DC108_DA109BB2BB07820.24 BB07
1091p3k_I_DA109_DA110BBBBB00850.16 BB00
1101p3k_I_DA110_DA111B12BB04670.14 BB04
1111p3k_I_DA111_DT112BBBBB00650.37 BB00
1121p3k_I_DT112_DA113BBBBB00680.26 BB00
1131p3k_I_DA113_DC114miBBB13580.29 BB13
1141p3k_I_DC114_DA115BBBBB00450.60 BB00
1151p3k_I_DA115_DC116B12BB04890.19 BB04
1161p3k_I_DC116_DT117BBBBB00230.43 BB00
1171p3k_I_DT117_DT118BBBBB00840.26 BB00
1181p3k_I_DT118_DT119BBBBB00710.36 BB00
1191p3k_I_DT119_DT120BBBBB00820.20 BB00
1201p3k_I_DT120_DG121B12BB04200.40 BB04
1211p3k_I_DG121_DG122BBBBB00660.28 BB00
1221p3k_I_DG122_DT123BBBBB00890.24 BB00
1231p3k_I_DT123_DA124BBBBB00840.15 BB00
1241p3k_I_DA124_DG125BBBBB00860.14 BB00
1251p3k_I_DG125_DA126BBBBB00240.51 BB00
1261p3k_I_DA126_DA127BBBBB00710.26 BB00
1271p3k_I_DA127_DT128BBBBB00910.18 BB00
1281p3k_I_DT128_DC129BBBBB00650.33 BB00
1291p3k_I_DC129_DT130BBBBB00600.30 BB00
1301p3k_I_DT130_DG131BB2BB07810.26 BB07
1311p3k_I_DG131_DC132BBBBB00840.22 BB00
1321p3k_I_DC132_DA133BB2BB07810.20 BB07
1331p3k_I_DA133_DG134BBwBB11750.36 BB11
1341p3k_I_DG134_DG135BBBBB00580.34 BB00
1351p3k_I_DG135_DT136BBBBB00650.34 BB00
1361p3k_I_DT136_DG137BBBBB00480.27 BB00
1371p3k_I_DG137_DG138B12BB04540.33 BB04
1381p3k_I_DG138_DA139B12BB04790.16 BB04
1391p3k_I_DA139_DT140BBBBB00770.20 BB00
1401p3k_I_DT140_DA141BB2BB07700.16 BB07
1411p3k_I_DA141_DT142BBBBB00640.31 BB00
1421p3k_I_DT142_DT143BBBBB00610.21 BB00
1431p3k_I_DT143_DG144BBBBB00780.23 BB00
1441p3k_I_DG144_DA145BBBBB00640.28 BB00
1451p3k_I_DA145_DT146BBBBB00530.28 BB00
1461p3k_J_DA147_DT148BBBBB00320.36 BB00
1471p3k_J_DT148_DC149miBBB13790.37 BB13
1481p3k_J_DC149_DA150NANNANT00.73 AB02
1491p3k_J_DA150_DA151BBBBB00430.34 BB00
1501p3k_J_DA151_DT152BBwBB02760.22 BB02
1511p3k_J_DT152_DA153BBBBB00780.23 BB00
1521p3k_J_DA153_DT154BBBBB00870.16 BB00
1531p3k_J_DT154_DC155BBBBB00900.18 BB00
1541p3k_J_DC155_DC156B12BB04210.40 BB04
1551p3k_J_DC156_DA157BB2BB07670.27 BB07
1561p3k_J_DA157_DC158BBBBB00800.20 BB00
1571p3k_J_DC158_DC159BBBBB00620.37 BB00
1581p3k_J_DC159_DT160BBBBB00910.10 BB00
1591p3k_J_DT160_DG161BB2BB07820.21 BB07
1601p3k_J_DG161_DC162BBBBB00710.24 BB00
1611p3k_J_DC162_DA163BB2BB07650.36 BB07
1621p3k_J_DA163_DG164BBBBB00420.37 BB00
1631p3k_J_DG164_DA165B12BB04780.17 BB04
1641p3k_J_DA165_DT166BBBBB00620.31 BB00
1651p3k_J_DT166_DT167BBBBB00580.31 BB00
1661p3k_J_DT167_DC168BBBBB00740.28 BB00
1671p3k_J_DC168_DT169BBBBB00360.33 BB00
1681p3k_J_DT169_DA170BBBBB00770.27 BB00
1691p3k_J_DA170_DC171BBwBB17430.46 BB17
1701p3k_J_DC171_DC172BBBBB00760.28 BB00
1711p3k_J_DC172_DA173BB2BB07780.32 BB07
1721p3k_J_DA173_DA174B12BB04680.28 BB04
1731p3k_J_DA174_DA175BBwBB02300.35 BB02
1741p3k_J_DA175_DA176BBBBB00340.44 BB00
1751p3k_J_DA176_DG177B12BB04530.17 BB04
1761p3k_J_DG177_DT178BBBBB00610.32 BB00
1771p3k_J_DT178_DG179BBBBB00880.18 BB00
1781p3k_J_DG179_DT180BBBBB00770.33 BB00
1791p3k_J_DT180_DA181BBBBB00180.39 BB00
1801p3k_J_DA181_DT182BBBBB00190.49 BB00
1811p3k_J_DT182_DT183BBBBB00850.28 BB00
1821p3k_J_DT183_DT184BBBBB00970.12 BB00
1831p3k_J_DT184_DG185BB2BB07810.23 BB07
1841p3k_J_DG185_DG186BBBBB00650.36 BB00
1851p3k_J_DG186_DA187BB2BB07490.33 BB07
1861p3k_J_DA187_DA188B12BB04450.35 BB04
1871p3k_J_DA188_DA189B12BB04720.36 BB04
1881p3k_J_DA189_DC190B12BB04800.30 BB04
1891p3k_J_DC190_DT191BBBBB00730.42 BB00
1901p3k_J_DT191_DG192BB2BB07760.29 BB07
1911p3k_J_DG192_DC193BBBBB00680.32 BB00
1921p3k_J_DC193_DT194BB2BB07850.28 BB07
1931p3k_J_DT194_DC195BBBBB00700.30 BB00
1941p3k_J_DC195_DC196BB2BB07650.21 BB07
1951p3k_J_DC196_DA197BBBBB00860.24 BB00
1961p3k_J_DA197_DT198miBBB15560.29 BB15
1971p3k_J_DT198_DC199B12BB04170.25 BB04
1981p3k_J_DC199_DA200BBBBB00810.22 BB00
1991p3k_J_DA200_DA201BBBBB00740.24 BB00
2001p3k_J_DA201_DA202B12BB04640.19 BB04
2011p3k_J_DA202_DA203BBBBB00740.28 BB00
2021p3k_J_DA203_DG204BB2BB07780.18 BB07
2031p3k_J_DG204_DG205NANNANT00.34 BB07
2041p3k_J_DG205_DC206NANNANT00.78 BB08
2051p3k_J_DC206_DA207BBBBB00230.39 BB00
2061p3k_J_DA207_DT208BBBBB00870.12 BB00
2071p3k_J_DT208_DG209BBBBB00750.25 BB00
2081p3k_J_DG209_DT210BBBBB00590.32 BB00
2091p3k_J_DT210_DT211BBBBB00750.16 BB00
2101p3k_J_DT211_DC212BBBBB00780.25 BB00
2111p3k_J_DC212_DA213BB2BB07640.20 BB07
2121p3k_J_DA213_DG214BB2BB07820.19 BB07
2131p3k_J_DG214_DC215BB2BB07220.37 BB07
2141p3k_J_DC215_DG216BB2BB07850.12 BB07
2151p3k_J_DG216_DG217B12BB04630.27 BB04
2161p3k_J_DG217_DA218BB2BB07640.23 BB07
2171p3k_J_DA218_DA219B12BB04710.28 BB04
2181p3k_J_DA219_DT220BBBBB00600.22 BB00
2191p3k_J_DT220_DT221B12BB04900.22 BB04
2201p3k_J_DT221_DC222BBwBB02840.17 BB02
2211p3k_J_DC222_DC223BBBBB00760.28 BB00
2221p3k_J_DC223_DG224BB2BB07940.23 BB07
2231p3k_J_DG224_DC225BBBBB00910.08 BB00
2241p3k_J_DC225_DT226BB2BB07460.24 BB07
2251p3k_J_DT226_DG227BB2BB08190.44 BB08
2261p3k_J_DG227_DA228BBBBB00670.38 BB00
2271p3k_J_DA228_DA229BBBBB00950.17 BB00
2281p3k_J_DA229_DC230BBBBB00660.25 BB00
2291p3k_J_DC230_DA231B12BB04620.37 BB04
2301p3k_J_DA231_DT232BBBBB00650.38 BB00
2311p3k_J_DT232_DG233BBBBB00840.19 BB00
2321p3k_J_DG233_DC234B12BB04890.23 BB04
2331p3k_J_DC234_DC235BB2BB07390.28 BB07
2341p3k_J_DC235_DT236B12BB04760.20 BB04
2351p3k_J_DT236_DT237B12BB04740.25 BB04
2361p3k_J_DT237_DT238BBBBB00710.23 BB00
2371p3k_J_DT238_DT239BBBBB00910.17 BB00
2381p3k_J_DT239_DG240B12BB04910.25 BB04
2391p3k_J_DG240_DA241BBBBB00340.40 BB00
2401p3k_J_DA241_DT242BBBBB00780.28 BB00
2411p3k_J_DT242_DG243BBwBB11640.27 BB11
2421p3k_J_DG243_DG244BBBBB00440.31 BB00
2431p3k_J_DG244_DA245BB2BB07900.13 BB07
2441p3k_J_DA245_DG246B12BB05510.50 BB05
2451p3k_J_DG246_DC247miBBB10450.36 BB10
2461p3k_J_DC247_DA248BBwBB11380.39 BB11
2471p3k_J_DA248_DG249BBBBB00470.43 BB00
2481p3k_J_DG249_DT250BBBBB00710.28 BB00
2491p3k_J_DT250_DT251BBBBB00930.20 BB00
2501p3k_J_DT251_DT252BBBBB00680.24 BB00
2511p3k_J_DT252_DC253BBBBB00610.38 BB00
2521p3k_J_DC253_DC254BB2BB07510.25 BB07
2531p3k_J_DC254_DA255BB2BB07410.29 BB07
2541p3k_J_DA255_DA256BBBBB00850.18 BB00
2551p3k_J_DA256_DA257B12BB04830.13 BB04
2561p3k_J_DA257_DT258miBBB13630.31 BB13
2571p3k_J_DT258_DA259BBwBB16700.38 BB16
2581p3k_J_DA259_DC260BBBBB00900.12 BB00
2591p3k_J_DC260_DA261BBBBB00690.28 BB00
2601p3k_J_DA261_DC262BBwBB02320.31 BB02
2611p3k_J_DC262_DT263BBBBB00720.20 BB00
2621p3k_J_DT263_DT264BBBBB00620.26 BB00
2631p3k_J_DT264_DT265B12BB04770.27 BB04
2641p3k_J_DT265_DT266BBBBB00700.35 BB00
2651p3k_J_DT266_DG267BB2BB07460.29 BB07
2661p3k_J_DG267_DG268BB2BB08830.22 BB08
2671p3k_J_DG268_DT269BBBBB00370.40 BB00
2681p3k_J_DT269_DA270BB2BB07700.32 BB07
2691p3k_J_DA270_DG271BBBBB00680.31 BB00
2701p3k_J_DG271_DA272B12BB04750.27 BB04
2711p3k_J_DA272_DA273BBBBB00310.35 BB00
2721p3k_J_DA273_DT274B12BB04820.23 BB04
2731p3k_J_DT274_DC275BBBBB00490.51 BB00
2741p3k_J_DC275_DT276NANNANT00.68 BB16
2751p3k_J_DT276_DG277BB2BB07800.32 BB07
2761p3k_J_DG277_DC278BBBBB00780.22 BB00
2771p3k_J_DC278_DA279BB2BB07790.29 BB07
2781p3k_J_DA279_DG280BBBBB00750.25 BB00
2791p3k_J_DG280_DG281BBBBB00680.38 BB00
2801p3k_J_DG281_DT282BBBBB00520.38 BB00
2811p3k_J_DT282_DG283BBBBB00600.26 BB00
2821p3k_J_DG283_DG284B12BB04300.40 BB04
2831p3k_J_DG284_DA285BB2BB07630.38 BB07
2841p3k_J_DA285_DT286BBBBB00620.42 BB00
2851p3k_J_DT286_DA287miBBB13690.28 BB13
2861p3k_J_DA287_DT288BBBBB00560.30 BB00
2871p3k_J_DT288_DT289BBwBB02870.14 BB02
2881p3k_J_DT289_DG290BBBBB00570.33 BB00
2891p3k_J_DG290_DA291B12BB04920.10 BB04
2901p3k_J_DA291_DT292BBBBB00870.15 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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