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Conformers: ABBIImiBZICOPNSYNN
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Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011p3i_I_DA1_DT2BBBBB00260.39 BB00
0021p3i_I_DT2_DC3BBBBB00850.15 BB00
0031p3i_I_DC3_DA4B12BB04830.28 BB04
0041p3i_I_DA4_DA5B12BB04900.14 BB04
0051p3i_I_DA5_DT6BBwBB02490.30 BB02
0061p3i_I_DT6_DA7BBBBB00720.25 BB00
0071p3i_I_DA7_DT8BBBBB00890.19 BB00
0081p3i_I_DT8_DC9B12BB04820.18 BB04
0091p3i_I_DC9_DC10NANNANT00.47 BB02
0101p3i_I_DC10_DA11BB2BB07570.19 BB07
0111p3i_I_DA11_DC12BBBBB00920.20 BB00
0121p3i_I_DC12_DC13BBBBB00550.37 BB00
0131p3i_I_DC13_DT14BBBBB00720.20 BB00
0141p3i_I_DT14_DG15BB2BB07450.36 BB07
0151p3i_I_DG15_DC16BBBBB00640.31 BB00
0161p3i_I_DC16_DA17B12BB04510.40 BB04
0171p3i_I_DA17_DG18BBBBB00820.21 BB00
0181p3i_I_DG18_DA19BBBBB00880.28 BB00
0191p3i_I_DA19_DT20NANNANT00.46 BB15
0201p3i_I_DT20_DT21NANNANT00.75 BB15
0211p3i_I_DT21_DC22NANNANT00.54 BB15
0221p3i_I_DC22_DT23NANNANT00.54 BB04
0231p3i_I_DT23_DA24BBBBB00660.38 BB00
0241p3i_I_DA24_DC25B12BB04810.24 BB04
0251p3i_I_DC25_DC26NANNANT00.42 BB02
0261p3i_I_DC26_DA27BB2BB07580.45 BB07
0271p3i_I_DA27_DA28NANNANT00.58 AB02
0281p3i_I_DA28_DA29NANNANT00.79 BB07
0291p3i_I_DA29_DA30BBBBB00700.28 BB00
0301p3i_I_DA30_DG31BBBBB00910.21 BB00
0311p3i_I_DG31_DT32BBBBB00650.37 BB00
0321p3i_I_DT32_DG33BBBBB00930.16 BB00
0331p3i_I_DG33_DT34miBBB13660.32 BB13
0341p3i_I_DT34_DA35BBBBB00390.45 BB00
0351p3i_I_DA35_DT36BBBBB00750.27 BB00
0361p3i_I_DT36_DT37BBBBB00760.30 BB00
0371p3i_I_DT37_DT38BBBBB00870.23 BB00
0381p3i_I_DT38_DG39BB2BB07670.27 BB07
0391p3i_I_DG39_DG40BBBBB00840.28 BB00
0401p3i_I_DG40_DA41BB2BB07910.28 BB07
0411p3i_I_DA41_DA42BBwBB02870.22 BB02
0421p3i_I_DA42_DA43BBBBB00850.24 BB00
0431p3i_I_DA43_DC44BBBBB00940.20 BB00
0441p3i_I_DC44_DT45BBBBB00430.40 BB00
0451p3i_I_DT45_DG46B12BB04830.16 BB04
0461p3i_I_DG46_DC47BBBBB00830.16 BB00
0471p3i_I_DC47_DT48BB2BB08510.46 BB08
0481p3i_I_DT48_DC49BBBBB00510.54 BB00
0491p3i_I_DC49_DC50BB2BB07700.20 BB07
0501p3i_I_DC50_DA51BBBBB00630.39 BB00
0511p3i_I_DA51_DT52BBBBB00840.18 BB00
0521p3i_I_DT52_DC53BBBBB00730.29 BB00
0531p3i_I_DC53_DA54B12BB04770.18 BB04
0541p3i_I_DA54_DA55BBBBB00720.23 BB00
0551p3i_I_DA55_DA56B12BB04680.31 BB04
0561p3i_I_DA56_DA57B12BB04750.24 BB04
0571p3i_I_DA57_DG58BBBBB00700.37 BB00
0581p3i_I_DG58_DG59BB2BB07610.41 BB07
0591p3i_I_DG59_DC60BBBBB00690.24 BB00
0601p3i_I_DC60_DA61BBBBB00710.32 BB00
0611p3i_I_DA61_DT62BBwBB02730.23 BB02
0621p3i_I_DT62_DG63BBBBB00690.41 BB00
0631p3i_I_DG63_DT64BBBBB00590.35 BB00
0641p3i_I_DT64_DT65BBBBB00900.15 BB00
0651p3i_I_DT65_DC66B12BB04830.24 BB04
0661p3i_I_DC66_DA67BB2BB07920.27 BB07
0671p3i_I_DA67_DG68BBBBB00750.19 BB00
0681p3i_I_DG68_DC69BB2BB07850.15 BB07
0691p3i_I_DC69_DG70BBBBB00740.38 BB00
0701p3i_I_DG70_DG71BBBBB00870.21 BB00
0711p3i_I_DG71_DA72BB2BB07790.24 BB07
0721p3i_I_DA72_DA73BBBBB00920.15 BB00
0731p3i_I_DA73_DT74BBBBB00880.17 BB00
0741p3i_I_DT74_DT75BBBBB00910.17 BB00
0751p3i_I_DT75_DC76B12BB04910.23 BB04
0761p3i_I_DC76_DC77B12BB04830.21 BB04
0771p3i_I_DC77_DG78BB2BB07530.31 BB07
0781p3i_I_DG78_DC79BB2BB07530.19 BB07
0791p3i_I_DC79_DT80B12BB04510.32 BB04
0801p3i_I_DT80_DG81B12BB04820.17 BB04
0811p3i_I_DG81_DA82BBBBB00890.23 BB00
0821p3i_I_DA82_DA83BBBBB00920.10 BB00
0831p3i_I_DA83_DC84BBBBB00770.21 BB00
0841p3i_I_DC84_DA85B12BB04920.14 BB04
0851p3i_I_DA85_DT86BBBBB00880.21 BB00
0861p3i_I_DT86_DG87BBBBB00880.16 BB00
0871p3i_I_DG87_DC88BB2BB07470.31 BB07
0881p3i_I_DC88_DC89B12BB04730.44 BB04
0891p3i_I_DC89_DT90BB2BB07610.23 BB07
0901p3i_I_DT90_DT91BBBBB00820.16 BB00
0911p3i_I_DT91_DT92BBBBB00860.15 BB00
0921p3i_I_DT92_DT93BBBBB00800.17 BB00
0931p3i_I_DT93_DG94BBwBB02370.28 BB02
0941p3i_I_DG94_DA95BBBBB00830.18 BB00
0951p3i_I_DA95_DT96BBBBB00880.20 BB00
0961p3i_I_DT96_DG97BB2BB07750.13 BB07
0971p3i_I_DG97_DG98BBBBB00890.20 BB00
0981p3i_I_DG98_DA99BB2BB07600.32 BB07
0991p3i_I_DA99_DG100BBBBB00800.27 BB00
1001p3i_I_DG100_DC101BB2BB07820.19 BB07
1011p3i_I_DC101_DA102BBBBB00930.17 BB00
1021p3i_I_DA102_DG103B12BB04860.21 BB04
1031p3i_I_DG103_DT104BBBBB00780.28 BB00
1041p3i_I_DT104_DT105B12BB04910.18 BB04
1051p3i_I_DT105_DT106BBBBB00870.27 BB00
1061p3i_I_DT106_DC107BBBBB00870.21 BB00
1071p3i_I_DC107_DC108B12BB04790.24 BB04
1081p3i_I_DC108_DA109BB2BB07880.22 BB07
1091p3i_I_DA109_DA110BBBBB00920.12 BB00
1101p3i_I_DA110_DA111B12BB04790.14 BB04
1111p3i_I_DA111_DT112BBBBB00620.36 BB00
1121p3i_I_DT112_DA113BBBBB00490.31 BB00
1131p3i_I_DA113_DC114miBBB13330.33 BB13
1141p3i_I_DC114_DA115BBBBB00730.43 BB00
1151p3i_I_DA115_DC116BBBBB00880.15 BB00
1161p3i_I_DC116_DT117BBBBB00770.26 BB00
1171p3i_I_DT117_DT118BBBBB00590.32 BB00
1181p3i_I_DT118_DT119BBBBB00740.35 BB00
1191p3i_I_DT119_DT120B12BB04470.24 BB04
1201p3i_I_DT120_DG121B12BB04480.35 BB04
1211p3i_I_DG121_DG122BBBBB00830.27 BB00
1221p3i_I_DG122_DT123BBBBB00880.16 BB00
1231p3i_I_DT123_DA124BBBBB00440.32 BB00
1241p3i_I_DA124_DG125B12BB04490.34 BB04
1251p3i_I_DG125_DA126BBBBB00250.45 BB00
1261p3i_I_DA126_DA127BBBBB00720.26 BB00
1271p3i_I_DA127_DT128BBBBB00600.35 BB00
1281p3i_I_DT128_DC129BBBBB00590.42 BB00
1291p3i_I_DC129_DT130BBBBB00900.21 BB00
1301p3i_I_DT130_DG131BB2BB07860.29 BB07
1311p3i_I_DG131_DC132BBBBB00800.21 BB00
1321p3i_I_DC132_DA133BB2BB07960.23 BB07
1331p3i_I_DA133_DG134BBBBB00720.26 BB00
1341p3i_I_DG134_DG135B12BB04780.20 BB04
1351p3i_I_DG135_DT136BBBBB00560.44 BB00
1361p3i_I_DT136_DG137BBBBB00780.23 BB00
1371p3i_I_DG137_DG138BBBBB00830.13 BB00
1381p3i_I_DG138_DA139B12BB04660.21 BB04
1391p3i_I_DA139_DT140BBBBB00820.26 BB00
1401p3i_I_DT140_DA141BB2BB07750.21 BB07
1411p3i_I_DA141_DT142BBBBB00830.22 BB00
1421p3i_I_DT142_DT143BBBBB00880.17 BB00
1431p3i_I_DT143_DG144BBBBB00870.22 BB00
1441p3i_I_DG144_DA145B12BB04860.17 BB04
1451p3i_I_DA145_DT146BBBBB00720.18 BB00
1461p3i_J_DA147_DT148BBBBB00540.34 BB00
1471p3i_J_DT148_DC149miBBB13420.42 BB13
1481p3i_J_DC149_DA150NANNANT00.78 AB02
1491p3i_J_DA150_DA151BB2BB07720.17 BB07
1501p3i_J_DA151_DT152BBwBB02910.14 BB02
1511p3i_J_DT152_DA153BBBBB00780.25 BB00
1521p3i_J_DA153_DT154BBBBB00920.18 BB00
1531p3i_J_DT154_DC155BBBBB00950.15 BB00
1541p3i_J_DC155_DC156B12BB04830.20 BB04
1551p3i_J_DC156_DA157B12BB04880.22 BB04
1561p3i_J_DA157_DC158BBBBB00850.19 BB00
1571p3i_J_DC158_DC159BBBBB00920.18 BB00
1581p3i_J_DC159_DT160BBBBB00840.21 BB00
1591p3i_J_DT160_DG161BB2BB07570.25 BB07
1601p3i_J_DG161_DC162BBBBB00830.20 BB00
1611p3i_J_DC162_DA163BB2BB07850.34 BB07
1621p3i_J_DA163_DG164BBBBB00660.28 BB00
1631p3i_J_DG164_DA165B12BB04890.19 BB04
1641p3i_J_DA165_DT166BBBBB00920.17 BB00
1651p3i_J_DT166_DT167B12BB04800.25 BB04
1661p3i_J_DT167_DC168BBBBB00200.51 BB00
1671p3i_J_DC168_DT169B12BB04820.21 BB04
1681p3i_J_DT169_DA170BBBBB00720.27 BB00
1691p3i_J_DA170_DC171BBBBB00660.25 BB00
1701p3i_J_DC171_DC172BBBBB00140.38 BB00
1711p3i_J_DC172_DA173BB2BB07460.38 BB07
1721p3i_J_DA173_DA174BBBBB00610.28 BB00
1731p3i_J_DA174_DA175NANNANT00.52 BB02
1741p3i_J_DA175_DA176BBBBB00600.44 BB00
1751p3i_J_DA176_DG177BBBBB00850.22 BB00
1761p3i_J_DG177_DT178BBBBB00920.21 BB00
1771p3i_J_DT178_DG179BBBBB00940.23 BB00
1781p3i_J_DG179_DT180BBBBB00810.27 BB00
1791p3i_J_DT180_DA181BBBBB00920.19 BB00
1801p3i_J_DA181_DT182BBBBB00580.35 BB00
1811p3i_J_DT182_DT183BBBBB00680.36 BB00
1821p3i_J_DT183_DT184BBBBB00880.13 BB00
1831p3i_J_DT184_DG185BB2BB07800.32 BB07
1841p3i_J_DG185_DG186BBBBB00790.28 BB00
1851p3i_J_DG186_DA187BB2BB07940.23 BB07
1861p3i_J_DA187_DA188BBBBB00890.26 BB00
1871p3i_J_DA188_DA189BBBBB00920.12 BB00
1881p3i_J_DA189_DC190BBBBB00930.20 BB00
1891p3i_J_DC190_DT191BBBBB00850.27 BB00
1901p3i_J_DT191_DG192BB2BB07870.29 BB07
1911p3i_J_DG192_DC193BBBBB00770.29 BB00
1921p3i_J_DC193_DT194B12BB04360.39 BB04
1931p3i_J_DT194_DC195BBBBB00680.33 BB00
1941p3i_J_DC195_DC196BB2BB07550.27 BB07
1951p3i_J_DC196_DA197BBBBB00900.21 BB00
1961p3i_J_DA197_DT198BBwBB02540.22 BB02
1971p3i_J_DT198_DC199B12BB04720.16 BB04
1981p3i_J_DC199_DA200BBBBB00390.39 BB00
1991p3i_J_DA200_DA201BBBBB00860.16 BB00
2001p3i_J_DA201_DA202B12BB04830.12 BB04
2011p3i_J_DA202_DA203BBBBB00790.20 BB00
2021p3i_J_DA203_DG204B12BB04600.28 BB04
2031p3i_J_DG204_DG205BB2BB07400.21 BB07
2041p3i_J_DG205_DC206NANNANT00.65 BB08
2051p3i_J_DC206_DA207BBBBB00130.37 BB00
2061p3i_J_DA207_DT208BBBBB00940.15 BB00
2071p3i_J_DT208_DG209BBBBB00870.21 BB00
2081p3i_J_DG209_DT210BBBBB00560.31 BB00
2091p3i_J_DT210_DT211BBBBB00870.21 BB00
2101p3i_J_DT211_DC212BBBBB00890.18 BB00
2111p3i_J_DC212_DA213B12BB04730.22 BB04
2121p3i_J_DA213_DG214BB2BB07890.31 BB07
2131p3i_J_DG214_DC215BBBBB00790.19 BB00
2141p3i_J_DC215_DG216BB2BB07900.00 BB07
2151p3i_J_DG216_DG217B12BB04870.19 BB04
2161p3i_J_DG217_DA218BBBBB00910.12 BB00
2171p3i_J_DA218_DA219B12BB04800.14 BB04
2181p3i_J_DA219_DT220BBBBB00860.24 BB00
2191p3i_J_DT220_DT221BBBBB00910.19 BB00
2201p3i_J_DT221_DC222BBBBB00880.15 BB00
2211p3i_J_DC222_DC223B12BB04610.28 BB04
2221p3i_J_DC223_DG224BBBBB00380.46 BB00
2231p3i_J_DG224_DC225BB2BB07510.23 BB07
2241p3i_J_DC225_DT226BBBBB00910.16 BB00
2251p3i_J_DT226_DG227NANNANT00.54 BB08
2261p3i_J_DG227_DA228B12BB04780.31 BB04
2271p3i_J_DA228_DA229BBBBB00920.20 BB00
2281p3i_J_DA229_DC230BBwBB02700.19 BB02
2291p3i_J_DC230_DA231B12BB04700.36 BB04
2301p3i_J_DA231_DT232BBBBB00500.50 BB00
2311p3i_J_DT232_DG233BBBBB00810.26 BB00
2321p3i_J_DG233_DC234B12BB04610.35 BB04
2331p3i_J_DC234_DC235NANNANT00.28 BB07
2341p3i_J_DC235_DT236B12BB04460.23 BB04
2351p3i_J_DT236_DT237BBBBB00800.24 BB00
2361p3i_J_DT237_DT238BBBBB00960.13 BB00
2371p3i_J_DT238_DT239BBBBB00930.14 BB00
2381p3i_J_DT239_DG240B12BB04800.28 BB04
2391p3i_J_DG240_DA241BBBBB00650.33 BB00
2401p3i_J_DA241_DT242BBBBB00710.25 BB00
2411p3i_J_DT242_DG243BBwBB11740.37 BB11
2421p3i_J_DG243_DG244BBBBB00690.32 BB00
2431p3i_J_DG244_DA245BB2BB07540.21 BB07
2441p3i_J_DA245_DG246BBBBB00800.24 BB00
2451p3i_J_DG246_DC247BB2BB07930.20 BB07
2461p3i_J_DC247_DA248BBBBB00820.21 BB00
2471p3i_J_DA248_DG249B12BB04120.17 BB04
2481p3i_J_DG249_DT250BBBBB00870.23 BB00
2491p3i_J_DT250_DT251BBBBB00930.12 BB00
2501p3i_J_DT251_DT252B12BB04960.16 BB04
2511p3i_J_DT252_DC253BBBBB00590.39 BB00
2521p3i_J_DC253_DC254BB2BB07550.32 BB07
2531p3i_J_DC254_DA255B12BB04450.36 BB04
2541p3i_J_DA255_DA256BBBBB00970.09 BB00
2551p3i_J_DA256_DA257B12BB04590.12 BB04
2561p3i_J_DA257_DT258BBwBB11880.16 BB11
2571p3i_J_DT258_DA259BBBBB00330.60 BB00
2581p3i_J_DA259_DC260B12BB04790.25 BB04
2591p3i_J_DC260_DA261BBBBB00760.29 BB00
2601p3i_J_DA261_DC262BBwBB02260.43 BB02
2611p3i_J_DC262_DT263BBBBB00750.35 BB00
2621p3i_J_DT263_DT264BBBBB00790.30 BB00
2631p3i_J_DT264_DT265B12BB04460.20 BB04
2641p3i_J_DT265_DT266BBBBB00700.23 BB00
2651p3i_J_DT266_DG267BB2BB07640.24 BB07
2661p3i_J_DG267_DG268BBwBB03660.44 BB03
2671p3i_J_DG268_DT269BBBBB00510.41 BB00
2681p3i_J_DT269_DA270B12BB04590.34 BB04
2691p3i_J_DA270_DG271NANNANT00.41 BB17
2701p3i_J_DG271_DA272NANNANT00.62 BA17
2711p3i_J_DA272_DA273NANNANT00.63 BB14
2721p3i_J_DA273_DT274BBBBB00870.25 BB00
2731p3i_J_DT274_DC275BBBBB00480.50 BB00
2741p3i_J_DC275_DT276BBBBB00760.32 BB00
2751p3i_J_DT276_DG277BB2BB07870.26 BB07
2761p3i_J_DG277_DC278BBBBB00810.17 BB00
2771p3i_J_DC278_DA279BB2BB07930.21 BB07
2781p3i_J_DA279_DG280BBBBB00780.25 BB00
2791p3i_J_DG280_DG281B12BB04640.25 BB04
2801p3i_J_DG281_DT282BBBBB00580.40 BB00
2811p3i_J_DT282_DG283B12BB04810.32 BB04
2821p3i_J_DG283_DG284B12BB04870.15 BB04
2831p3i_J_DG284_DA285B12BB04810.26 BB04
2841p3i_J_DA285_DT286BBBBB00480.37 BB00
2851p3i_J_DT286_DA287miBBB12740.28 BB12
2861p3i_J_DA287_DT288BBwBB16760.39 BB16
2871p3i_J_DT288_DT289BBwBB02870.20 BB02
2881p3i_J_DT289_DG290BBBBB00750.32 BB00
2891p3i_J_DG290_DA291B12BB04950.14 BB04
2901p3i_J_DA291_DT292BBBBB00920.23 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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