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Conformers: ABBIImiBZICOPNSYNN
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Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011p3f_I_DA1_DT2BBBBB00170.45 BB00
0021p3f_I_DT2_DC3NANNANT00.38 BB17
0031p3f_I_DC3_DA4B12BB04180.31 BB04
0041p3f_I_DA4_DA5BBBBB00790.23 BB00
0051p3f_I_DA5_DT6BBwBB02730.19 BB02
0061p3f_I_DT6_DA7BBBBB00510.37 BB00
0071p3f_I_DA7_DT8BBBBB00800.25 BB00
0081p3f_I_DT8_DC9BBBBB00680.26 BB00
0091p3f_I_DC9_DC10BBBBB00320.23 BB00
0101p3f_I_DC10_DA11B12BB04720.26 BB04
0111p3f_I_DA11_DC12BBBBB00780.32 BB00
0121p3f_I_DC12_DC13BBBBB00460.34 BB00
0131p3f_I_DC13_DT14BBBBB00870.21 BB00
0141p3f_I_DT14_DG15BB2BB07460.31 BB07
0151p3f_I_DG15_DC16BBBBB00520.35 BB00
0161p3f_I_DC16_DA17B12BB04290.46 BB04
0171p3f_I_DA17_DG18B12BB04440.35 BB04
0181p3f_I_DG18_DA19BBBBB00590.39 BB00
0191p3f_I_DA19_DT20B12BB04620.37 BB04
0201p3f_I_DT20_DT21BBBBB00450.42 BB00
0211p3f_I_DT21_DC22miBBB12140.69 BB12
0221p3f_I_DC22_DT23BBwBB17580.35 BB17
0231p3f_I_DT23_DA24BBBBB00700.21 BB00
0241p3f_I_DA24_DC25BBBBB00920.20 BB00
0251p3f_I_DC25_DC26BBwBB02260.38 BB02
0261p3f_I_DC26_DA27BB2BB07390.32 BB07
0271p3f_I_DA27_DA28miBBB10330.58 BB10
0281p3f_I_DA28_DA29NANNANT00.40 BB02
0291p3f_I_DA29_DA30BBBBB00240.37 BB00
0301p3f_I_DA30_DG31BBBBB00840.22 BB00
0311p3f_I_DG31_DT32BBBBB00670.32 BB00
0321p3f_I_DT32_DG33BBBBB00860.20 BB00
0331p3f_I_DG33_DT34miBBB13500.45 BB13
0341p3f_I_DT34_DA35BBBBB00370.47 BB00
0351p3f_I_DA35_DT36BBBBB00630.35 BB00
0361p3f_I_DT36_DT37BBBBB00710.39 BB00
0371p3f_I_DT37_DT38BBBBB00780.23 BB00
0381p3f_I_DT38_DG39NANNANT00.49 BA17
0391p3f_I_DG39_DG40NANNANT00.39 AB02
0401p3f_I_DG40_DA41BB2BB07830.29 BB07
0411p3f_I_DA41_DA42BBBBB00150.33 BB00
0421p3f_I_DA42_DA43B12BB04660.21 BB04
0431p3f_I_DA43_DC44BBBBB00850.28 BB00
0441p3f_I_DC44_DT45BBBBB00640.35 BB00
0451p3f_I_DT45_DG46B12BB04590.18 BB04
0461p3f_I_DG46_DC47BB2BB07290.32 BB07
0471p3f_I_DC47_DT48BB2BB08700.41 BB08
0481p3f_I_DT48_DC49BBBBB00310.63 BB00
0491p3f_I_DC49_DC50BB2BB07510.23 BB07
0501p3f_I_DC50_DA51B12BB04690.27 BB04
0511p3f_I_DA51_DT52BBBBB00680.24 BB00
0521p3f_I_DT52_DC53B12BB04510.42 BB04
0531p3f_I_DC53_DA54BBBBB00320.35 BB00
0541p3f_I_DA54_DA55BBBBB00540.25 BB00
0551p3f_I_DA55_DA56BB2BB07520.33 BB07
0561p3f_I_DA56_DA57NANNANT00.28 BB00
0571p3f_I_DA57_DG58BB2BB07240.44 BB07
0581p3f_I_DG58_DG59NANNANT00.85 BB12
0591p3f_I_DG59_DC60BBwBB16230.36 BB16
0601p3f_I_DC60_DA61B12BB04630.34 BB04
0611p3f_I_DA61_DT62BBBBB00720.22 BB00
0621p3f_I_DT62_DG63B12BB04670.37 BB04
0631p3f_I_DG63_DT64BBBBB00670.39 BB00
0641p3f_I_DT64_DT65BBBBB00750.15 BB00
0651p3f_I_DT65_DC66B12BB04700.29 BB04
0661p3f_I_DC66_DA67BB2BB07680.28 BB07
0671p3f_I_DA67_DG68B12BB04220.40 BB04
0681p3f_I_DG68_DC69BB2BB07680.22 BB07
0691p3f_I_DC69_DG70BBBBB00490.42 BB00
0701p3f_I_DG70_DG71B12BB04350.43 BB04
0711p3f_I_DG71_DA72BB2BB07700.24 BB07
0721p3f_I_DA72_DA73miBBB15630.19 BB15
0731p3f_I_DA73_DT74BBBBB00730.21 BB00
0741p3f_I_DT74_DT75BBBBB00820.19 BB00
0751p3f_I_DT75_DC76B12BB04880.20 BB04
0761p3f_I_DC76_DC77BBBBB00340.33 BB00
0771p3f_I_DC77_DG78BB2BB07320.32 BB07
0781p3f_I_DG78_DC79miBBB10830.41 BB10
0791p3f_I_DC79_DT80B12BB04530.26 BB04
0801p3f_I_DT80_DG81BBBBB00720.36 BB00
0811p3f_I_DG81_DA82BBBBB00800.23 BB00
0821p3f_I_DA82_DA83BBBBB00810.15 BB00
0831p3f_I_DA83_DC84BBBBB00820.21 BB00
0841p3f_I_DC84_DA85B12BB04600.21 BB04
0851p3f_I_DA85_DT86B12BB04160.43 BB04
0861p3f_I_DT86_DG87BBBBB00670.21 BB00
0871p3f_I_DG87_DC88BB2BB07420.33 BB07
0881p3f_I_DC88_DC89BBBBB00520.24 BB00
0891p3f_I_DC89_DT90B-ABA17650.29 BA17
0901p3f_I_DT90_DT91BBBBB00670.18 BB00
0911p3f_I_DT91_DT92BBBBB00720.17 BB00
0921p3f_I_DT92_DT93miBBB15350.28 BB15
0931p3f_I_DT93_DG94NANNANT00.34 BB02
0941p3f_I_DG94_DA95BBBBB00650.32 BB00
0951p3f_I_DA95_DT96BBBBB00740.24 BB00
0961p3f_I_DT96_DG97B12BB04600.27 BB04
0971p3f_I_DG97_DG98B12BB04720.41 BB04
0981p3f_I_DG98_DA99NANNANT00.29 BB07
0991p3f_I_DA99_DG100B12BB04150.53 BB04
1001p3f_I_DG100_DC101BB2BB07400.31 BB07
1011p3f_I_DC101_DA102BBBBB00570.29 BB00
1021p3f_I_DA102_DG103BBBBB00470.47 BB00
1031p3f_I_DG103_DT104BBBBB00620.32 BB00
1041p3f_I_DT104_DT105B12BB04660.24 BB04
1051p3f_I_DT105_DT106BBBBB00850.30 BB00
1061p3f_I_DT106_DC107BBBBB00680.23 BB00
1071p3f_I_DC107_DC108B12BB04510.33 BB04
1081p3f_I_DC108_DA109BB2BB07430.27 BB07
1091p3f_I_DA109_DA110BBBBB00800.15 BB00
1101p3f_I_DA110_DA111BBBBB00630.33 BB00
1111p3f_I_DA111_DT112BBBBB00430.27 BB00
1121p3f_I_DT112_DA113BBBBB00580.30 BB00
1131p3f_I_DA113_DC114miBBB12140.62 BB12
1141p3f_I_DC114_DA115BBBBB00120.62 BB00
1151p3f_I_DA115_DC116B12BB04770.18 BB04
1161p3f_I_DC116_DT117BBBBB00690.34 BB00
1171p3f_I_DT117_DT118B12BB04660.21 BB04
1181p3f_I_DT118_DT119BBBBB00780.20 BB00
1191p3f_I_DT119_DT120BB2BB07220.34 BB07
1201p3f_I_DT120_DG121B12BB04210.36 BB04
1211p3f_I_DG121_DG122BBBBB00710.31 BB00
1221p3f_I_DG122_DT123BBBBB00740.22 BB00
1231p3f_I_DT123_DA124BBBBB00640.23 BB00
1241p3f_I_DA124_DG125NANNANT00.52 AB02
1251p3f_I_DG125_DA126NANNANT00.63 BB00
1261p3f_I_DA126_DA127BBBBB00810.21 BB00
1271p3f_I_DA127_DT128BBBBB00550.38 BB00
1281p3f_I_DT128_DC129BBBBB00210.53 BB00
1291p3f_I_DC129_DT130NANNANT00.29 BB00
1301p3f_I_DT130_DG131BB2BB07720.32 BB07
1311p3f_I_DG131_DC132BBBBB00430.32 BB00
1321p3f_I_DC132_DA133BB2BB07120.42 BB07
1331p3f_I_DA133_DG134NANNANT00.86 BB08
1341p3f_I_DG134_DG135NANNANT00.52 BB10
1351p3f_I_DG135_DT136BBBBB00590.40 BB00
1361p3f_I_DT136_DG137BBBBB00140.40 BB00
1371p3f_I_DG137_DG138BBBBB00330.29 BB00
1381p3f_I_DG138_DA139NANNANT00.53 BB10
1391p3f_I_DA139_DT140BBBBB00460.26 BB00
1401p3f_I_DT140_DA141BB2BB07280.29 BB07
1411p3f_I_DA141_DT142miBBB15450.26 BB15
1421p3f_I_DT142_DT143BBBBB01750.22 BB01
1431p3f_I_DT143_DG144BBBBB00830.22 BB00
1441p3f_I_DG144_DA145BBBBB00620.40 BB00
1451p3f_I_DA145_DT146miBBB10790.26 BB10
1461p3f_J_DA147_DT148BBBBB00130.39 BB00
1471p3f_J_DT148_DC149miBBB13730.54 BB13
1481p3f_J_DC149_DA150NANNANT00.69 AB02
1491p3f_J_DA150_DA151BBBBB00650.32 BB00
1501p3f_J_DA151_DT152BBwBB02570.21 BB02
1511p3f_J_DT152_DA153BBBBB00720.30 BB00
1521p3f_J_DA153_DT154BBBBB00780.15 BB00
1531p3f_J_DT154_DC155BBBBB00650.15 BB00
1541p3f_J_DC155_DC156B12BB04620.25 BB04
1551p3f_J_DC156_DA157B12BB04440.21 BB04
1561p3f_J_DA157_DC158BBBBB00200.26 BB00
1571p3f_J_DC158_DC159BBBBB00770.29 BB00
1581p3f_J_DC159_DT160BBBBB00390.19 BB00
1591p3f_J_DT160_DG161BB2BB07630.24 BB07
1601p3f_J_DG161_DC162B12BB04540.40 BB04
1611p3f_J_DC162_DA163BB2BB07430.36 BB07
1621p3f_J_DA163_DG164B12BB0490.51 BB04
1631p3f_J_DG164_DA165B12BB04610.26 BB04
1641p3f_J_DA165_DT166BBBBB00850.25 BB00
1651p3f_J_DT166_DT167B12BB04800.24 BB04
1661p3f_J_DT167_DC168BBwBB02450.35 BB02
1671p3f_J_DC168_DT169BBBBB00560.22 BB00
1681p3f_J_DT169_DA170BBBBB00740.24 BB00
1691p3f_J_DA170_DC171BB2BB07610.29 BB07
1701p3f_J_DC171_DC172BBBBB00240.47 BB00
1711p3f_J_DC172_DA173BB2BB07120.28 BB07
1721p3f_J_DA173_DA174NANNANT00.36 BA17
1731p3f_J_DA174_DA175NANNANT00.54 BB02
1741p3f_J_DA175_DA176BBBBB00330.43 BB00
1751p3f_J_DA176_DG177B12BB04750.21 BB04
1761p3f_J_DG177_DT178BBBBB00710.34 BB00
1771p3f_J_DT178_DG179BBBBB00860.11 BB00
1781p3f_J_DG179_DT180BBBBB00620.36 BB00
1791p3f_J_DT180_DA181NANNANT00.39 BB17
1801p3f_J_DA181_DT182BBBBB00370.44 BB00
1811p3f_J_DT182_DT183BBBBB00640.43 BB00
1821p3f_J_DT183_DT184BBBBB00900.17 BB00
1831p3f_J_DT184_DG185BB2BB07640.34 BB07
1841p3f_J_DG185_DG186BBBBB00470.37 BB00
1851p3f_J_DG186_DA187BB2BB07590.41 BB07
1861p3f_J_DA187_DA188BBBBB00830.19 BB00
1871p3f_J_DA188_DA189B12BB04570.32 BB04
1881p3f_J_DA189_DC190BBBBB00740.34 BB00
1891p3f_J_DC190_DT191BBBBB00700.33 BB00
1901p3f_J_DT191_DG192BB2BB07890.26 BB07
1911p3f_J_DG192_DC193BBBBB00540.32 BB00
1921p3f_J_DC193_DT194BB2BB07680.30 BB07
1931p3f_J_DT194_DC195BBBBB00200.34 BB00
1941p3f_J_DC195_DC196BB2BB07370.26 BB07
1951p3f_J_DC196_DA197BBBBB00710.30 BB00
1961p3f_J_DA197_DT198BBwBB02560.22 BB02
1971p3f_J_DT198_DC199B12BB04500.23 BB04
1981p3f_J_DC199_DA200NANNANT00.32 BB17
1991p3f_J_DA200_DA201BBBBB00630.23 BB00
2001p3f_J_DA201_DA202BBBBB00590.26 BB00
2011p3f_J_DA202_DA203B12BB04490.34 BB04
2021p3f_J_DA203_DG204BB2BB07410.21 BB07
2031p3f_J_DG204_DG205BB2BB07120.32 BB07
2041p3f_J_DG205_DC206NANNANT01.04 OP24
2051p3f_J_DC206_DA207B12BB04410.35 BB04
2061p3f_J_DA207_DT208BBBBB01660.14 BB01
2071p3f_J_DT208_DG209BBBBB00360.21 BB00
2081p3f_J_DG209_DT210B12BB04650.34 BB04
2091p3f_J_DT210_DT211BBBBB00650.21 BB00
2101p3f_J_DT211_DC212BBBBB00870.24 BB00
2111p3f_J_DC212_DA213B12BB04500.28 BB04
2121p3f_J_DA213_DG214BB2BB07660.27 BB07
2131p3f_J_DG214_DC215BBBBB00660.22 BB00
2141p3f_J_DC215_DG216BB2BB07410.19 BB07
2151p3f_J_DG216_DG217B12BB04520.21 BB04
2161p3f_J_DG217_DA218BBBBB00760.17 BB00
2171p3f_J_DA218_DA219B12BB04210.27 BB04
2181p3f_J_DA219_DT220BBBBB00620.24 BB00
2191p3f_J_DT220_DT221BBBBB00780.21 BB00
2201p3f_J_DT221_DC222BBBBB00550.24 BB00
2211p3f_J_DC222_DC223BBwBB11430.50 BB11
2221p3f_J_DC223_DG224BBwBB16700.25 BB16
2231p3f_J_DG224_DC225BB2BB07620.20 BB07
2241p3f_J_DC225_DT226BB2BB07190.34 BB07
2251p3f_J_DT226_DG227NANNANT00.55 BB08
2261p3f_J_DG227_DA228BBBBB00610.37 BB00
2271p3f_J_DA228_DA229BBBBB00900.19 BB00
2281p3f_J_DA229_DC230BBBBB00300.30 BB00
2291p3f_J_DC230_DA231B12BB04160.47 BB04
2301p3f_J_DA231_DT232BBBBB00700.36 BB00
2311p3f_J_DT232_DG233BBBBB00750.28 BB00
2321p3f_J_DG233_DC234BBBBB00340.41 BB00
2331p3f_J_DC234_DC235NANNANT00.55 AB02
2341p3f_J_DC235_DT236BBBBB00490.44 BB00
2351p3f_J_DT236_DT237BBBBB00780.23 BB00
2361p3f_J_DT237_DT238BBBBB00860.21 BB00
2371p3f_J_DT238_DT239BBBBB00840.24 BB00
2381p3f_J_DT239_DG240B12BB04690.33 BB04
2391p3f_J_DG240_DA241B12BB04820.22 BB04
2401p3f_J_DA241_DT242BBBBB00290.46 BB00
2411p3f_J_DT242_DG243BBwBB11630.41 BB11
2421p3f_J_DG243_DG244BBBBB00130.42 BB00
2431p3f_J_DG244_DA245BB2BB07830.19 BB07
2441p3f_J_DA245_DG246B12BB05450.44 BB05
2451p3f_J_DG246_DC247BB2BB07330.42 BB07
2461p3f_J_DC247_DA248NANNANT00.36 BB03
2471p3f_J_DA248_DG249BBBBB00260.63 BB00
2481p3f_J_DG249_DT250BBBBB00430.40 BB00
2491p3f_J_DT250_DT251BBBBB00920.12 BB00
2501p3f_J_DT251_DT252B12BB04760.25 BB04
2511p3f_J_DT252_DC253BBBBB00720.31 BB00
2521p3f_J_DC253_DC254BB2BB07490.23 BB07
2531p3f_J_DC254_DA255miBBB10400.59 BB10
2541p3f_J_DA255_DA256BBBBB00790.13 BB00
2551p3f_J_DA256_DA257B12BB04640.19 BB04
2561p3f_J_DA257_DT258NANNANT00.49 BB03
2571p3f_J_DT258_DA259NANNANT00.53 BB15
2581p3f_J_DA259_DC260B12BB04750.24 BB04
2591p3f_J_DC260_DA261BBBBB00560.35 BB00
2601p3f_J_DA261_DC262NANNANT00.42 BB02
2611p3f_J_DC262_DT263BBBBB00680.25 BB00
2621p3f_J_DT263_DT264BBBBB00790.26 BB00
2631p3f_J_DT264_DT265miBBB10430.39 BB10
2641p3f_J_DT265_DT266B12BB04460.31 BB04
2651p3f_J_DT266_DG267BB2BB07450.45 BB07
2661p3f_J_DG267_DG268BB2BB08370.39 BB08
2671p3f_J_DG268_DT269BBBBB00280.37 BB00
2681p3f_J_DT269_DA270BB2BB07490.28 BB07
2691p3f_J_DA270_DG271BBBBB00680.38 BB00
2701p3f_J_DG271_DA272B12BB04650.32 BB04
2711p3f_J_DA272_DA273BBBBB00480.33 BB00
2721p3f_J_DA273_DT274BBBBB00300.37 BB00
2731p3f_J_DT274_DC275BBBBB00410.52 BB00
2741p3f_J_DC275_DT276BBBBB00770.33 BB00
2751p3f_J_DT276_DG277BB2BB07550.29 BB07
2761p3f_J_DG277_DC278miBBB15740.27 BB15
2771p3f_J_DC278_DA279BB2BB07660.26 BB07
2781p3f_J_DA279_DG280BBBBB00540.29 BB00
2791p3f_J_DG280_DG281BBBBB00390.46 BB00
2801p3f_J_DG281_DT282BBBBB00250.41 BB00
2811p3f_J_DT282_DG283B12BB04260.43 BB04
2821p3f_J_DG283_DG284miBBB10630.43 BB10
2831p3f_J_DG284_DA285B12BB04550.38 BB04
2841p3f_J_DA285_DT286BBBBB00680.34 BB00
2851p3f_J_DT286_DA287miBBB13440.38 BB13
2861p3f_J_DA287_DT288BBBBB00300.47 BB00
2871p3f_J_DT288_DT289BBwBB02490.21 BB02
2881p3f_J_DT289_DG290BBBBB00170.29 BB00
2891p3f_J_DG290_DA291B12BB04890.11 BB04
2901p3f_J_DA291_DT292BBBBB00680.18 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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