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Conformers: ABBIImiBZICOPNSYNN
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Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011p3a_I_DA1_DT2BBBBB00520.35 BB00
0021p3a_I_DT2_DC3BBBBB00800.20 BB00
0031p3a_I_DC3_DA4B12BB04920.19 BB04
0041p3a_I_DA4_DA5BBBBB00670.21 BB00
0051p3a_I_DA5_DT6BBwBB02900.14 BB02
0061p3a_I_DT6_DA7BBBBB00480.38 BB00
0071p3a_I_DA7_DT8BBBBB00680.33 BB00
0081p3a_I_DT8_DC9BBBBB00250.49 BB00
0091p3a_I_DC9_DC10BBBBB00170.30 BB00
0101p3a_I_DC10_DA11B12BB04750.17 BB04
0111p3a_I_DA11_DC12BBBBB00740.33 BB00
0121p3a_I_DC12_DC13BBBBB00320.39 BB00
0131p3a_I_DC13_DT14B12BB04720.27 BB04
0141p3a_I_DT14_DG15BBBBB00360.40 BB00
0151p3a_I_DG15_DC16B12BB04520.29 BB04
0161p3a_I_DC16_DA17B12BB04580.33 BB04
0171p3a_I_DA17_DG18B12BB04550.38 BB04
0181p3a_I_DG18_DA19B12BB04770.18 BB04
0191p3a_I_DA19_DT20B12BB04730.23 BB04
0201p3a_I_DT20_DT21BBBBB00690.47 BB00
0211p3a_I_DT21_DC22BBwBB03530.42 BB03
0221p3a_I_DC22_DT23BBwBB17320.40 BB17
0231p3a_I_DT23_DA24BBBBB00380.38 BB00
0241p3a_I_DA24_DC25BBBBB00610.42 BB00
0251p3a_I_DC25_DC26NANNANT00.43 BB02
0261p3a_I_DC26_DA27NANNANT00.56 BB07
0271p3a_I_DA27_DA28NANNANT00.64 BB14
0281p3a_I_DA28_DA29BBwBB02450.38 BB02
0291p3a_I_DA29_DA30BBBBB00320.38 BB00
0301p3a_I_DA30_DG31BBBBB00740.30 BB00
0311p3a_I_DG31_DT32BBBBB00670.31 BB00
0321p3a_I_DT32_DG33BBBBB00800.23 BB00
0331p3a_I_DG33_DT34miBBB13540.41 BB13
0341p3a_I_DT34_DA35BBBBB00450.42 BB00
0351p3a_I_DA35_DT36BBBBB00920.20 BB00
0361p3a_I_DT36_DT37BBBBB00630.37 BB00
0371p3a_I_DT37_DT38BBBBB00830.21 BB00
0381p3a_I_DT38_DG39BB2BB07740.30 BB07
0391p3a_I_DG39_DG40BBBBB00550.34 BB00
0401p3a_I_DG40_DA41BB2BB07810.35 BB07
0411p3a_I_DA41_DA42BBBBB00850.24 BB00
0421p3a_I_DA42_DA43B12BB04840.17 BB04
0431p3a_I_DA43_DC44BBBBB00800.31 BB00
0441p3a_I_DC44_DT45BBBBB00490.33 BB00
0451p3a_I_DT45_DG46B12BB04760.22 BB04
0461p3a_I_DG46_DC47B12BB04680.28 BB04
0471p3a_I_DC47_DT48NANNANT00.58 BB08
0481p3a_I_DT48_DC49BBwBB16510.31 BB16
0491p3a_I_DC49_DC50BB2BB07460.25 BB07
0501p3a_I_DC50_DA51B12BB04830.21 BB04
0511p3a_I_DA51_DT52BBBBB00870.18 BB00
0521p3a_I_DT52_DC53BBBBB00770.20 BB00
0531p3a_I_DC53_DA54B12BB04840.19 BB04
0541p3a_I_DA54_DA55BBBBB00470.39 BB00
0551p3a_I_DA55_DA56BB2BB07550.29 BB07
0561p3a_I_DA56_DA57BBBBB00540.40 BB00
0571p3a_I_DA57_DG58B12BB04510.23 BB04
0581p3a_I_DG58_DG59BBwBB03230.68 BB03
0591p3a_I_DG59_DC60BBBBB00480.31 BB00
0601p3a_I_DC60_DA61B12BB04640.21 BB04
0611p3a_I_DA61_DT62BBBBB00570.19 BB00
0621p3a_I_DT62_DG63B12BB04800.28 BB04
0631p3a_I_DG63_DT64BBBBB00360.39 BB00
0641p3a_I_DT64_DT65BBBBB00890.14 BB00
0651p3a_I_DT65_DC66BBBBB00580.20 BB00
0661p3a_I_DC66_DA67BB2BB07930.25 BB07
0671p3a_I_DA67_DG68B12BB04410.40 BB04
0681p3a_I_DG68_DC69BB2BB07840.22 BB07
0691p3a_I_DC69_DG70B12BB04540.34 BB04
0701p3a_I_DG70_DG71BBBBB00820.27 BB00
0711p3a_I_DG71_DA72BBBBB00780.16 BB00
0721p3a_I_DA72_DA73BBBBB00880.23 BB00
0731p3a_I_DA73_DT74BBBBB00760.30 BB00
0741p3a_I_DT74_DT75BBBBB00860.20 BB00
0751p3a_I_DT75_DC76BBBBB00660.23 BB00
0761p3a_I_DC76_DC77BB2BB07480.41 BB07
0771p3a_I_DC77_DG78BB2BB07540.36 BB07
0781p3a_I_DG78_DC79BB2BB07620.24 BB07
0791p3a_I_DC79_DT80BB2BB07780.22 BB07
0801p3a_I_DT80_DG81BBBBB00480.37 BB00
0811p3a_I_DG81_DA82BBwBB02420.35 BB02
0821p3a_I_DA82_DA83BBBBB00510.24 BB00
0831p3a_I_DA83_DC84BBBBB00760.23 BB00
0841p3a_I_DC84_DA85B12BB04740.21 BB04
0851p3a_I_DA85_DT86BBBBB00870.20 BB00
0861p3a_I_DT86_DG87BBBBB00620.24 BB00
0871p3a_I_DG87_DC88BB2BB07360.25 BB07
0881p3a_I_DC88_DC89BB2BB07500.41 BB07
0891p3a_I_DC89_DT90BB2BB07650.21 BB07
0901p3a_I_DT90_DT91BBBBB00860.16 BB00
0911p3a_I_DT91_DT92BBBBB00910.15 BB00
0921p3a_I_DT92_DT93BBBBB00610.26 BB00
0931p3a_I_DT93_DG94BBwBB02580.19 BB02
0941p3a_I_DG94_DA95BBBBB00890.11 BB00
0951p3a_I_DA95_DT96BBBBB00630.36 BB00
0961p3a_I_DT96_DG97B12BB04690.21 BB04
0971p3a_I_DG97_DG98B12BB04530.42 BB04
0981p3a_I_DG98_DA99BB2BB07790.27 BB07
0991p3a_I_DA99_DG100BBBBB00270.47 BB00
1001p3a_I_DG100_DC101BB2BB07690.26 BB07
1011p3a_I_DC101_DA102BBBBB00640.26 BB00
1021p3a_I_DA102_DG103BBBBB00610.39 BB00
1031p3a_I_DG103_DT104BBBBB00880.22 BB00
1041p3a_I_DT104_DT105BBBBB00660.19 BB00
1051p3a_I_DT105_DT106BBBBB00870.20 BB00
1061p3a_I_DT106_DC107BBBBB00600.32 BB00
1071p3a_I_DC107_DC108BB2BB07630.43 BB07
1081p3a_I_DC108_DA109BB2BB07950.16 BB07
1091p3a_I_DA109_DA110BBBBB00900.16 BB00
1101p3a_I_DA110_DA111BBBBB00860.21 BB00
1111p3a_I_DA111_DT112B12BB04780.24 BB04
1121p3a_I_DT112_DA113BBBBB00450.36 BB00
1131p3a_I_DA113_DC114miBBB13630.26 BB13
1141p3a_I_DC114_DA115BBBBB00330.53 BB00
1151p3a_I_DA115_DC116BBBBB00700.23 BB00
1161p3a_I_DC116_DT117BBBBB00780.28 BB00
1171p3a_I_DT117_DT118BBBBB00630.38 BB00
1181p3a_I_DT118_DT119BBBBB00430.40 BB00
1191p3a_I_DT119_DT120NANNANT00.46 AB02
1201p3a_I_DT120_DG121BB2BB07660.36 BB07
1211p3a_I_DG121_DG122B12BB04470.36 BB04
1221p3a_I_DG122_DT123BBBBB00820.24 BB00
1231p3a_I_DT123_DA124BBBBB00730.25 BB00
1241p3a_I_DA124_DG125BBBBB00750.27 BB00
1251p3a_I_DG125_DA126BBBBB00370.40 BB00
1261p3a_I_DA126_DA127BBBBB00880.20 BB00
1271p3a_I_DA127_DT128BBBBB00900.26 BB00
1281p3a_I_DT128_DC129BBBBB00820.24 BB00
1291p3a_I_DC129_DT130B12BB04730.34 BB04
1301p3a_I_DT130_DG131BB2BB07640.32 BB07
1311p3a_I_DG131_DC132BBBBB00790.23 BB00
1321p3a_I_DC132_DA133BB2BB07650.27 BB07
1331p3a_I_DA133_DG134B12BB05370.48 BB05
1341p3a_I_DG134_DG135BBBBB00580.39 BB00
1351p3a_I_DG135_DT136BBBBB00770.30 BB00
1361p3a_I_DT136_DG137BBBBB00540.31 BB00
1371p3a_I_DG137_DG138BBBBB00670.24 BB00
1381p3a_I_DG138_DA139B12BB04620.24 BB04
1391p3a_I_DA139_DT140BBBBB00830.23 BB00
1401p3a_I_DT140_DA141BB2BB07560.23 BB07
1411p3a_I_DA141_DT142BBBBB00740.27 BB00
1421p3a_I_DT142_DT143BBBBB00910.20 BB00
1431p3a_I_DT143_DG144BBBBB00630.30 BB00
1441p3a_I_DG144_DA145B12BB04680.27 BB04
1451p3a_I_DA145_DT146BBBBB00710.24 BB00
1461p3a_J_DA147_DT148BBBBB00580.30 BB00
1471p3a_J_DT148_DC149NANNANT00.53 BB03
1481p3a_J_DC149_DA150NANNANT00.69 AB02
1491p3a_J_DA150_DA151B12BB04810.18 BB04
1501p3a_J_DA151_DT152BBwBB02850.17 BB02
1511p3a_J_DT152_DA153BBBBB00680.28 BB00
1521p3a_J_DA153_DT154BBBBB00890.12 BB00
1531p3a_J_DT154_DC155B12BB04850.25 BB04
1541p3a_J_DC155_DC156miBBB10430.27 BB10
1551p3a_J_DC156_DA157BB2BB07600.25 BB07
1561p3a_J_DA157_DC158BBBBB00820.24 BB00
1571p3a_J_DC158_DC159BBBBB00730.31 BB00
1581p3a_J_DC159_DT160BBBBB00810.19 BB00
1591p3a_J_DT160_DG161BB2BB07750.27 BB07
1601p3a_J_DG161_DC162BBBBB00880.17 BB00
1611p3a_J_DC162_DA163BB2BB07690.25 BB07
1621p3a_J_DA163_DG164B12BB04410.39 BB04
1631p3a_J_DG164_DA165BB2BB07650.26 BB07
1641p3a_J_DA165_DT166BBBBB00770.28 BB00
1651p3a_J_DT166_DT167BBBBB00940.19 BB00
1661p3a_J_DT167_DC168BBBBB00560.36 BB00
1671p3a_J_DC168_DT169BBBBB00650.34 BB00
1681p3a_J_DT169_DA170BBBBB00830.19 BB00
1691p3a_J_DA170_DC171BBBBB00800.23 BB00
1701p3a_J_DC171_DC172BBBBB00790.24 BB00
1711p3a_J_DC172_DA173BB2BB07430.38 BB07
1721p3a_J_DA173_DA174BB2BB07210.43 BB07
1731p3a_J_DA174_DA175NANNANT00.62 BB08
1741p3a_J_DA175_DA176BBwBB16470.30 BB16
1751p3a_J_DA176_DG177B12BB04750.20 BB04
1761p3a_J_DG177_DT178BBBBB00740.25 BB00
1771p3a_J_DT178_DG179B12BB04910.19 BB04
1781p3a_J_DG179_DT180BBBBB00430.44 BB00
1791p3a_J_DT180_DA181BBwBB17510.23 BB17
1801p3a_J_DA181_DT182BB2BB07110.52 BB07
1811p3a_J_DT182_DT183BBBBB00760.32 BB00
1821p3a_J_DT183_DT184BBBBB00890.17 BB00
1831p3a_J_DT184_DG185BB2BB07790.27 BB07
1841p3a_J_DG185_DG186BBBBB00550.37 BB00
1851p3a_J_DG186_DA187BB2BB07930.28 BB07
1861p3a_J_DA187_DA188B12BB04770.28 BB04
1871p3a_J_DA188_DA189BBBBB00870.22 BB00
1881p3a_J_DA189_DC190BBBBB00820.29 BB00
1891p3a_J_DC190_DT191BBBBB00850.35 BB00
1901p3a_J_DT191_DG192BB2BB07610.26 BB07
1911p3a_J_DG192_DC193BBBBB00830.20 BB00
1921p3a_J_DC193_DT194BB2BB07700.28 BB07
1931p3a_J_DT194_DC195BBBBB00640.27 BB00
1941p3a_J_DC195_DC196BB2BB07380.23 BB07
1951p3a_J_DC196_DA197BBBBB00910.15 BB00
1961p3a_J_DA197_DT198NANNANT00.39 BB15
1971p3a_J_DT198_DC199BB2BB07400.32 BB07
1981p3a_J_DC199_DA200BBBBB00280.38 BB00
1991p3a_J_DA200_DA201BBBBB00830.18 BB00
2001p3a_J_DA201_DA202B12BB04700.20 BB04
2011p3a_J_DA202_DA203BBBBB00710.25 BB00
2021p3a_J_DA203_DG204B12BB04460.26 BB04
2031p3a_J_DG204_DG205BB2BB07290.23 BB07
2041p3a_J_DG205_DC206BBwBB02460.23 BB02
2051p3a_J_DC206_DA207BB2BB07100.29 BB07
2061p3a_J_DA207_DT208BBBBB00950.14 BB00
2071p3a_J_DT208_DG209B12BB04530.39 BB04
2081p3a_J_DG209_DT210B12BB04820.23 BB04
2091p3a_J_DT210_DT211B12BB04800.25 BB04
2101p3a_J_DT211_DC212BBBBB00650.21 BB00
2111p3a_J_DC212_DA213BBBBB00530.31 BB00
2121p3a_J_DA213_DG214BB2BB07780.22 BB07
2131p3a_J_DG214_DC215BBBBB00740.21 BB00
2141p3a_J_DC215_DG216BB2BB07780.14 BB07
2151p3a_J_DG216_DG217B12BB04650.19 BB04
2161p3a_J_DG217_DA218B12BB04850.24 BB04
2171p3a_J_DA218_DA219B12BB04800.34 BB04
2181p3a_J_DA219_DT220B12BB04430.34 BB04
2191p3a_J_DT220_DT221BBBBB00920.24 BB00
2201p3a_J_DT221_DC222BBBBB00970.10 BB00
2211p3a_J_DC222_DC223B12BB04870.18 BB04
2221p3a_J_DC223_DG224BB2BB07590.29 BB07
2231p3a_J_DG224_DC225B12BB04640.26 BB04
2241p3a_J_DC225_DT226BB2BB07700.27 BB07
2251p3a_J_DT226_DG227BB2BB08380.47 BB08
2261p3a_J_DG227_DA228B12BB04800.26 BB04
2271p3a_J_DA228_DA229BBBBB00890.16 BB00
2281p3a_J_DA229_DC230BBwBB02740.20 BB02
2291p3a_J_DC230_DA231B12BB04650.37 BB04
2301p3a_J_DA231_DT232BBBBB00530.42 BB00
2311p3a_J_DT232_DG233BBBBB00320.38 BB00
2321p3a_J_DG233_DC234B12BB04390.24 BB04
2331p3a_J_DC234_DC235BB2BB07620.23 BB07
2341p3a_J_DC235_DT236BBBBB00700.33 BB00
2351p3a_J_DT236_DT237BBBBB00510.34 BB00
2361p3a_J_DT237_DT238BBBBB00810.19 BB00
2371p3a_J_DT238_DT239BBBBB00940.21 BB00
2381p3a_J_DT239_DG240B12BB04840.33 BB04
2391p3a_J_DG240_DA241BBBBB00760.32 BB00
2401p3a_J_DA241_DT242BBBBB00720.28 BB00
2411p3a_J_DT242_DG243BBwBB11860.29 BB11
2421p3a_J_DG243_DG244BBBBB00200.47 BB00
2431p3a_J_DG244_DA245BB2BB07640.23 BB07
2441p3a_J_DA245_DG246BBwBB11690.41 BB11
2451p3a_J_DG246_DC247BB2BB07530.31 BB07
2461p3a_J_DC247_DA248BBwBB1190.48 BB11
2471p3a_J_DA248_DG249B12BB04380.48 BB04
2481p3a_J_DG249_DT250BBBBB00910.19 BB00
2491p3a_J_DT250_DT251BBBBB00740.27 BB00
2501p3a_J_DT251_DT252BBBBB00840.25 BB00
2511p3a_J_DT252_DC253BBBBB00730.24 BB00
2521p3a_J_DC253_DC254BB2BB07810.23 BB07
2531p3a_J_DC254_DA255BB2BB07650.22 BB07
2541p3a_J_DA255_DA256BBBBB00740.22 BB00
2551p3a_J_DA256_DA257B12BB04810.12 BB04
2561p3a_J_DA257_DT258miBBB13500.27 BB13
2571p3a_J_DT258_DA259BBwBB16500.41 BB16
2581p3a_J_DA259_DC260BBBBB00850.24 BB00
2591p3a_J_DC260_DA261BBBBB00870.16 BB00
2601p3a_J_DA261_DC262NANNANT00.35 BB02
2611p3a_J_DC262_DT263BBBBB00790.20 BB00
2621p3a_J_DT263_DT264BBBBB00730.32 BB00
2631p3a_J_DT264_DT265BBBBB00620.26 BB00
2641p3a_J_DT265_DT266BBBBB00830.26 BB00
2651p3a_J_DT266_DG267BB2BB07600.30 BB07
2661p3a_J_DG267_DG268BBBBB00720.32 BB00
2671p3a_J_DG268_DT269BBBBB00830.20 BB00
2681p3a_J_DT269_DA270BB2BB07520.51 BB07
2691p3a_J_DA270_DG271NANNANT00.39 AB02
2701p3a_J_DG271_DA272BBBBB00140.48 BB00
2711p3a_J_DA272_DA273NANNANT00.52 BB14
2721p3a_J_DA273_DT274B12BB04730.26 BB04
2731p3a_J_DT274_DC275BBBBB00810.26 BB00
2741p3a_J_DC275_DT276BBBBB00810.26 BB00
2751p3a_J_DT276_DG277BB2BB07840.25 BB07
2761p3a_J_DG277_DC278BBBBB00510.24 BB00
2771p3a_J_DC278_DA279BB2BB07910.23 BB07
2781p3a_J_DA279_DG280BBBBB00700.31 BB00
2791p3a_J_DG280_DG281B12BB04530.30 BB04
2801p3a_J_DG281_DT282BBBBB00320.45 BB00
2811p3a_J_DT282_DG283BBBBB00830.21 BB00
2821p3a_J_DG283_DG284B12BB04790.32 BB04
2831p3a_J_DG284_DA285BB2BB07440.48 BB07
2841p3a_J_DA285_DT286BBBBB00540.40 BB00
2851p3a_J_DT286_DA287BBwBB03560.42 BB03
2861p3a_J_DA287_DT288BBBBB00590.25 BB00
2871p3a_J_DT288_DT289BBwBB02910.10 BB02
2881p3a_J_DT289_DG290BBBBB00670.28 BB00
2891p3a_J_DG290_DA291B12BB04850.16 BB04
2901p3a_J_DA291_DT292BBBBB00920.15 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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