Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of Smad3-MH1 bound to DNA at 2.4 A resolution
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1ozj_C_DT1001_DC1002 | BBB | BB00 | 54 | 0.40 |
| 02 | 1ozj_C_DC1002_DA1003 | BBB | BB00 | 88 | 0.18 |
| 03 | 1ozj_C_DA1003_DG1004 | B12 | BB04 | 83 | 0.15 |
| 04 | 1ozj_C_DG1004_DT1005 | BBB | BB00 | 73 | 0.30 |
| 05 | 1ozj_C_DT1005_DC1006 | BBB | BB00 | 87 | 0.20 |
| 06 | 1ozj_C_DC1006_DT1007 | BBB | BB00 | 90 | 0.19 |
| 07 | 1ozj_C_DT1007_DA1008 | BB2 | BB07 | 78 | 0.34 |
| 08 | 1ozj_C_DA1008_DG1009 | BBB | BB00 | 77 | 0.20 |
| 09 | 1ozj_C_DG1009_DA1010 | BBB | BB00 | 80 | 0.18 |
| 10 | 1ozj_C_DA1010_DC1011 | BBw | BB02 | 58 | 0.25 |
| 11 | 1ozj_C_DC1011_DA1012 | BBB | BB00 | 79 | 0.36 |
| 12 | 1ozj_C_DA1012_DT1013 | BBw | BB02 | 59 | 0.32 |
| 13 | 1ozj_C_DT1013_DA1014 | BBB | BB00 | 60 | 0.42 |
| 14 | 1ozj_C_DA1014_DC1015 | BBw | BB11 | 87 | 0.10 |
| 15 | 1ozj_D_DG2001_DT2002 | SYN | BBS1 | 49 | 0.27 |
| 16 | 1ozj_D_DT2002_DA2003 | BBB | BB00 | 88 | 0.21 |
| 17 | 1ozj_D_DA2003_DT2004 | BBB | BB00 | 77 | 0.27 |
| 18 | 1ozj_D_DT2004_DG2005 | B12 | BB04 | 78 | 0.11 |
| 19 | 1ozj_D_DG2005_DT2006 | BBB | BB00 | 70 | 0.29 |
| 20 | 1ozj_D_DT2006_DC2007 | BBB | BB00 | 91 | 0.10 |
| 21 | 1ozj_D_DC2007_DT2008 | BBB | BB00 | 87 | 0.21 |
| 22 | 1ozj_D_DT2008_DA2009 | BB2 | BB07 | 71 | 0.35 |
| 23 | 1ozj_D_DA2009_DG2010 | BBB | BB00 | 71 | 0.22 |
| 24 | 1ozj_D_DG2010_DA2011 | BBB | BB00 | 80 | 0.21 |
| 25 | 1ozj_D_DA2011_DC2012 | BBB | BB00 | 80 | 0.22 |
| 26 | 1ozj_D_DC2012_DT2013 | BBB | BB00 | 83 | 0.19 |
| 27 | 1ozj_D_DT2013_DG2014 | BB2 | BB08 | 66 | 0.33 |
| 28 | 1ozj_D_DG2014_DA2015 | BBB | BB00 | 58 | 0.39 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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