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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of wild-type Cre recombinase-loxP synapse

Results of the assignment of 140 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011ouq_C_DC100_DG101SYNBBS1540.20 BBS1
0021ouq_C_DG101_DA102BBBBB00730.23 BB00
0031ouq_C_DA102_DT103BBwBB02780.18 BB02
0041ouq_C_DT103_DA104BBBBB00110.48 BB00
0051ouq_C_DA104_DA105BBBBB01710.34 BB01
0061ouq_C_DA105_DC106NANNANT00.54 BB02
0071ouq_C_DC106_UMP107NANNANT00.34 BB03
0081ouq_C_UMP107_DT108BBwBB16620.58 BB16
0091ouq_C_DT108_DC109BBwBB02620.22 BB02
0101ouq_C_DC109_DG110BBBBB00860.24 BB00
0111ouq_C_DG110_DT111BBBBB00810.21 BB00
0121ouq_C_DT111_DA112BBBBB00820.17 BB00
0131ouq_C_DA112_DT113BBBBB01710.18 BB01
0141ouq_C_DT113_DA114BBBBB00250.42 BB00
0151ouq_X_DT116_DG117B12BB04510.32 BB04
0161ouq_X_DG117_DT118BBBBB00910.16 BB00
0171ouq_X_DT118_DA119BBwBB11250.34 BB11
0181ouq_X_DA119_DT120NANNANT00.65 IC04
0191ouq_X_DT120_DG121BB2BB07200.51 BB07
0201ouq_X_DG121_DC122NANNANT00.54 BB12
0211ouq_X_DC122_DT123BBwBB16600.58 BB16
0221ouq_X_DT123_DA124B12BB05640.28 BB05
0231ouq_X_DA124_DT125NANNANT00.69 BB16
0241ouq_X_DT125_DA126NANNANT00.48 BB02
0251ouq_X_DA126_DC127BBBBB00190.35 BB00
0261ouq_X_DC127_DG128BB2BB07800.15 BB07
0271ouq_X_DG128_DA129BBBBB00900.14 BB00
0281ouq_X_DA129_DA130B12BB04930.14 BB04
0291ouq_X_DA130_DG131BBBBB00790.20 BB00
0301ouq_X_DG131_DT132BBwBB02610.24 BB02
0311ouq_X_DT132_DT133BBBBB00770.22 BB00
0321ouq_X_DT133_DA134B12BB04530.29 BB04
0331ouq_X_DA134_DT135BBwBB02520.30 BB02
0341ouq_X_DT135_DC136BBwBB11560.38 BB11
0351ouq_D_DG100_DG101NANNANT00.50 BB03
0361ouq_D_DG101_DA102BBBBB00500.32 BB00
0371ouq_D_DA102_DT103BBBBB00890.20 BB00
0381ouq_D_DT103_DA104B12BB04530.29 BB04
0391ouq_D_DA104_DA105BBBBB00530.34 BB00
0401ouq_D_DA105_DC106B-ABA09500.20 BA09
0411ouq_D_DC106_DT107NANNANT00.48 BB16
0421ouq_D_DT107_DT108BBwBB02550.17 BB02
0431ouq_D_DT108_DC109BBwBB02170.23 BB02
0441ouq_D_DC109_DG110BBBBB00750.24 BB00
0451ouq_D_DG110_DT111B12BB04730.24 BB04
0461ouq_D_DT111_DA112BBBBB00680.30 BB00
0471ouq_D_DA112_DT113BBwBB02850.13 BB02
0481ouq_D_DT113_DA114B12BB0490.28 BB04
0491ouq_D_DA114_DG115BBBBB01320.20 BB01
0501ouq_D_DG115_DC116miBBB12380.34 BB12
0511ouq_D_DC116_DA117ICLIC06310.53 IC06
0521ouq_D_DA117_DT118B12BB04590.31 BB04
0531ouq_D_DT118_DA119B12BB04420.37 BB04
0541ouq_D_DA119_DC120BBBBB00860.18 BB00
0551ouq_D_DC120_DA121BBBBB00770.31 BB00
0561ouq_D_DA121_DT122miBBB12830.29 BB12
0571ouq_D_DT122_DT123BBwBB16620.49 BB16
0581ouq_D_DT123_DA124NANNANT00.55 BB08
0591ouq_D_DA124_DT125NANNANT00.48 AB03
0601ouq_D_DT125_DA126BBBBB0090.53 BB00
0611ouq_D_DA126_DC127BBBBB00710.30 BB00
0621ouq_D_DC127_DG128BB2BB07650.22 BB07
0631ouq_D_DG128_DA129BBwBB02940.21 BB02
0641ouq_D_DA129_DA130BBwBB11190.31 BB11
0651ouq_D_DA130_DG131BBBBB00390.31 BB00
0661ouq_D_DG131_DT132BBBBB00640.35 BB00
0671ouq_D_DT132_DT133NANNANT00.62 BB02
0681ouq_D_DT133_DA134NANNANT00.60 BB11
0691ouq_D_DA134_DT135BBwBB03570.34 BB03
0701ouq_D_DT135_DC136BBBBB00170.33 BB00
0711ouq_G_DC100_DG101miBBB13850.35 BB13
0721ouq_G_DG101_DA102BBBBB00140.43 BB00
0731ouq_G_DA102_DT103BBBBB00900.18 BB00
0741ouq_G_DT103_DA104B12BB04820.19 BB04
0751ouq_G_DA104_DA105BBBBB00710.30 BB00
0761ouq_G_DA105_DC106NANNANT00.48 BB02
0771ouq_G_DC106_UMP107BBBBB00210.38 BB00
0781ouq_G_UMP107_DT108BBwBB03670.36 BB03
0791ouq_G_DT108_DC109BBBBB00310.50 BB00
0801ouq_G_DC109_DG110B12BB04690.26 BB04
0811ouq_G_DG110_DT111BBBBB00680.28 BB00
0821ouq_G_DT111_DA112BBBBB00830.13 BB00
0831ouq_G_DA112_DT113BBBBB00840.21 BB00
0841ouq_G_DT113_DA114B12BB04680.27 BB04
0851ouq_Y_DT116_DG117NANNANT00.79 BB03
0861ouq_Y_DG117_DT118NANNANT00.72 BB00
0871ouq_Y_DT118_DA119NANNANT00.50 BB07
0881ouq_Y_DA119_DT120NANNANT00.51 BB17
0891ouq_Y_DT120_DG121BB2BB07220.34 BB07
0901ouq_Y_DG121_DC122NANNANT00.44 BB13
0911ouq_Y_DC122_DT123NANNANT00.39 BB02
0921ouq_Y_DT123_DA124BBBBB00720.22 BB00
0931ouq_Y_DA124_DT125BBBBB00120.40 BB00
0941ouq_Y_DT125_DA126BBwBB02290.45 BB02
0951ouq_Y_DA126_DC127BBBBB00470.37 BB00
0961ouq_Y_DC127_DG128BB2BB07770.30 BB07
0971ouq_Y_DG128_DA129BBBBB00810.21 BB00
0981ouq_Y_DA129_DA130B12BB04850.17 BB04
0991ouq_Y_DA130_DG131BBwBB11740.24 BB11
1001ouq_Y_DG131_DT132NANNANT00.43 BB02
1011ouq_Y_DT132_DT133BBBBB00620.33 BB00
1021ouq_Y_DT133_DA134BBwBB11700.36 BB11
1031ouq_Y_DA134_DT135miBBB13420.43 BB13
1041ouq_Y_DT135_DC136BBBBB00380.36 BB00
1051ouq_H_DG100_DG101BBBBB00460.37 BB00
1061ouq_H_DG101_DA102BBBBB00590.29 BB00
1071ouq_H_DA102_DT103miBBB13870.13 BB13
1081ouq_H_DT103_DA104BBwBB16760.36 BB16
1091ouq_H_DA104_DA105BBBBB00810.24 BB00
1101ouq_H_DA105_DC106NANNANT00.55 BB02
1111ouq_H_DC106_DT107NANNANT00.48 BB11
1121ouq_H_DT107_DT108BBwBB16640.57 BB16
1131ouq_H_DT108_DC109BBwBB02680.24 BB02
1141ouq_H_DC109_DG110BBBBB00710.39 BB00
1151ouq_H_DG110_DT111BBBBB00460.34 BB00
1161ouq_H_DT111_DA112BBBBB00600.28 BB00
1171ouq_H_DA112_DT113BBwBB02640.20 BB02
1181ouq_H_DT113_DA114B-ABA0590.57 BA05
1191ouq_H_DA114_DG115BBBBB00300.20 BB00
1201ouq_H_DG115_DC116B12BB04600.42 BB04
1211ouq_H_DC116_DA117BB2BB07320.55 BB07
1221ouq_H_DA117_DT118NANNANT00.34 BB07
1231ouq_H_DT118_DA119BB2BB07790.31 BB07
1241ouq_H_DA119_DC120BBBBB00690.31 BB00
1251ouq_H_DC120_DA121BBBBB00770.29 BB00
1261ouq_H_DA121_DT122miBBB12690.34 BB12
1271ouq_H_DT122_DT123BBwBB16740.47 BB16
1281ouq_H_DT123_DA124NANNANT00.38 BA08
1291ouq_H_DA124_DT125BBBBB00130.40 BB00
1301ouq_H_DT125_DA126BBwBB02110.45 BB02
1311ouq_H_DA126_DC127BBBBB00590.39 BB00
1321ouq_H_DC127_DG128BB2BB07840.21 BB07
1331ouq_H_DG128_DA129BBwBB02780.32 BB02
1341ouq_H_DA129_DA130BBBBB00580.24 BB00
1351ouq_H_DA130_DG131BBBBB00570.22 BB00
1361ouq_H_DG131_DT132BBBBB00560.36 BB00
1371ouq_H_DT132_DT133B12BB04810.32 BB04
1381ouq_H_DT133_DA134BBwBB11540.37 BB11
1391ouq_H_DA134_DT135BBwBB02240.35 BB02
1401ouq_H_DT135_DC136BBBBB00570.26 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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