Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1osb_B_DG1_DC2 | NAN | NANT | 0 | 1.54 |
| 02 | 1osb_B_DC2_DG3 | NAN | NANT | 0 | 1.12 |
| 03 | 1osb_B_DG3_DC4 | BBB | BB00 | 68 | 0.23 |
| 04 | 1osb_B_DC4_DA5 | BBB | BB00 | 67 | 0.30 |
| 05 | 1osb_B_DA5_DC6 | B12 | BB04 | 55 | 0.31 |
| 06 | 1osb_B_DC6_DC7 | B-A | BA16 | 71 | 0.28 |
| 07 | 1osb_B_DC7_DG8 | A-B | AB05 | 52 | 0.46 |
| 08 | 1osb_B_DG8_DA9 | BBB | BB00 | 57 | 0.29 |
| 09 | 1osb_B_DA9_DA10 | NAN | NANT | 0 | 1.11 |
| 10 | 1osb_B_DA10_DA11 | NAN | NANT | 0 | 0.99 |
| 11 | 1osb_B_DA11_DG12 | NAN | NANT | 0 | 1.00 |
| 12 | 1osb_B_DG12_DG13 | NAN | NANT | 0 | 0.44 |
| 13 | 1osb_B_DG13_DT14 | B-A | BA01 | 37 | 0.15 |
| 14 | 1osb_B_DT14_DG15 | A-B | AB01 | 28 | 0.14 |
| 15 | 1osb_B_DG15_DC16 | B-A | BA05 | 68 | 0.23 |
| 16 | 1osb_B_DC16_DG17 | NAN | NANT | 0 | 0.43 |
| 17 | 1osb_B_DG17_DT18 | NAN | NANT | 0 | 0.34 |
| 18 | 1osb_B_DT18_DA19 | NAN | NANT | 0 | 0.92 |
| 19 | 1osb_B_DA19_DT20 | NAN | NANT | 0 | 0.86 |
| 20 | 1osb_B_DT20_DT21 | NAN | NANT | 0 | 1.36 |
| 21 | 1osb_B_DT21_DG22 | NAN | NANT | 0 | 0.65 |
| 22 | 1osb_B_DG22_DT23 | NAN | NANT | 0 | 1.00 |
| 23 | 1osb_B_DT23_DC24 | NAN | NANT | 0 | 0.61 |
| 24 | 1osb_B_DC24_DT25 | NAN | NANT | 0 | 2.04 |
| 25 | 1osb_D_DG1_DC2 | NAN | NANT | 0 | 1.54 |
| 26 | 1osb_D_DC2_DG3 | NAN | NANT | 0 | 1.11 |
| 27 | 1osb_D_DG3_DC4 | BBB | BB00 | 70 | 0.23 |
| 28 | 1osb_D_DC4_DA5 | BBB | BB00 | 67 | 0.30 |
| 29 | 1osb_D_DA5_DC6 | B12 | BB04 | 55 | 0.31 |
| 30 | 1osb_D_DC6_DC7 | B-A | BA16 | 68 | 0.29 |
| 31 | 1osb_D_DC7_DG8 | A-B | AB05 | 53 | 0.45 |
| 32 | 1osb_D_DG8_DA9 | NAN | NANT | 0 | 0.58 |
| 33 | 1osb_D_DA9_DA10 | NAN | NANT | 0 | 0.97 |
| 34 | 1osb_D_DA10_DA11 | NAN | NANT | 0 | 1.42 |
| 35 | 1osb_D_DA11_DG12 | NAN | NANT | 0 | 0.98 |
| 36 | 1osb_D_DG12_DG13 | BBB | BB00 | 11 | 0.48 |
| 37 | 1osb_D_DG13_DT14 | B-A | BA05 | 41 | 0.34 |
| 38 | 1osb_D_DT14_DG15 | A-B | AB03 | 85 | 0.35 |
| 39 | 1osb_D_DG15_DC16 | B-A | BA05 | 66 | 0.22 |
| 40 | 1osb_D_DC16_DG17 | NAN | NANT | 0 | 0.42 |
| 41 | 1osb_D_DG17_DT18 | NAN | NANT | 0 | 0.35 |
| 42 | 1osb_D_DT18_DA19 | NAN | NANT | 0 | 0.93 |
| 43 | 1osb_D_DA19_DT20 | NAN | NANT | 0 | 0.86 |
| 44 | 1osb_D_DT20_DT21 | NAN | NANT | 0 | 1.34 |
| 45 | 1osb_D_DT21_DG22 | NAN | NANT | 0 | 0.66 |
| 46 | 1osb_D_DG22_DT23 | NAN | NANT | 0 | 1.00 |
| 47 | 1osb_D_DT23_DC24 | NAN | NANT | 0 | 0.60 |
| 48 | 1osb_D_DC24_DT25 | NAN | NANT | 0 | 2.03 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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