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Conformers: ABBIImiBZICOPNSYNN
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P6.1 stem loop from the activation domain of hTR

Results of the assignment of 280 detected steps in 20 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011oq0-m10_A_G1_A2NANNANT00.65 AA05
0021oq0-m11_A_G1_A2NANNANT00.68 AA05
0031oq0-m12_A_G1_A2NANNANT00.65 AA05
0041oq0-m13_A_G1_A2NANNANT00.49 BA10
0051oq0-m14_A_G1_A2NANNANT00.50 BA10
0061oq0-m15_A_G1_A2NANNANT00.51 BA10
0071oq0-m16_A_G1_A2NANNANT00.52 BA10
0081oq0-m17_A_G1_A2NANNANT00.69 AA05
0091oq0-m18_A_G1_A2NANNANT00.64 AA05
0101oq0-m19_A_G1_A2NANNANT00.45 AA01
0111oq0-m1_A_G1_A2NANNANT00.47 AA01
0121oq0-m20_A_G1_A2NANNANT00.51 BA10
0131oq0-m2_A_G1_A2NANNANT00.51 BA10
0141oq0-m3_A_G1_A2NANNANT00.72 AA05
0151oq0-m4_A_G1_A2NANNANT00.66 AA05
0161oq0-m5_A_G1_A2NANNANT00.68 AA05
0171oq0-m6_A_G1_A2NANNANT00.53 BA10
0181oq0-m7_A_G1_A2NANNANT00.66 AA05
0191oq0-m8_A_G1_A2NANNANT00.45 AA01
0201oq0-m9_A_G1_A2NANNANT00.51 BA10
0211oq0-m10_A_A2_G3AAAAA03620.25 AA03
0221oq0-m11_A_A2_G3NANNANT00.28 AA03
0231oq0-m12_A_A2_G3NANNANT00.31 AA03
0241oq0-m13_A_A2_G3NANNANT00.30 AA03
0251oq0-m14_A_A2_G3NANNANT00.28 AA03
0261oq0-m15_A_A2_G3AAAAA03490.23 AA03
0271oq0-m16_A_A2_G3NANNANT00.25 AA03
0281oq0-m17_A_A2_G3NANNANT00.23 AA03
0291oq0-m18_A_A2_G3AAAAA03640.23 AA03
0301oq0-m19_A_A2_G3NANNANT00.32 AA03
0311oq0-m1_A_A2_G3NANNANT00.34 AA03
0321oq0-m20_A_A2_G3NANNANT00.28 AA03
0331oq0-m2_A_A2_G3NANNANT00.27 AA03
0341oq0-m3_A_A2_G3NANNANT00.25 AA03
0351oq0-m4_A_A2_G3NANNANT00.27 AA03
0361oq0-m5_A_A2_G3AAAAA03590.23 AA03
0371oq0-m6_A_A2_G3NANNANT00.30 AA03
0381oq0-m7_A_A2_G3AAAAA03590.23 AA03
0391oq0-m8_A_A2_G3AAAAA03510.23 AA03
0401oq0-m9_A_A2_G3NANNANT00.29 AA03
0411oq0-m10_A_G3_A4NANNANT00.66 BA10
0421oq0-m11_A_G3_A4NANNANT00.72 AA05
0431oq0-m12_A_G3_A4NANNANT00.63 BA10
0441oq0-m13_A_G3_A4NANNANT00.66 BA10
0451oq0-m14_A_G3_A4NANNANT00.64 BA10
0461oq0-m15_A_G3_A4NANNANT00.65 BA10
0471oq0-m16_A_G3_A4NANNANT00.65 BA10
0481oq0-m17_A_G3_A4NANNANT00.64 BA10
0491oq0-m18_A_G3_A4NANNANT00.66 BA10
0501oq0-m19_A_G3_A4NANNANT00.62 BA10
0511oq0-m1_A_G3_A4NANNANT00.65 BA10
0521oq0-m20_A_G3_A4NANNANT00.65 BA10
0531oq0-m2_A_G3_A4NANNANT00.66 BA10
0541oq0-m3_A_G3_A4NANNANT00.65 BA10
0551oq0-m4_A_G3_A4NANNANT00.64 BA10
0561oq0-m5_A_G3_A4NANNANT00.65 BA10
0571oq0-m6_A_G3_A4NANNANT00.64 BA10
0581oq0-m7_A_G3_A4NANNANT00.66 BA10
0591oq0-m8_A_G3_A4NANNANT00.64 BA10
0601oq0-m9_A_G3_A4NANNANT00.67 BA10
0611oq0-m10_A_A4_G5AAAAA08660.28 AA08
0621oq0-m11_A_A4_G5AAAAA00470.26 AA00
0631oq0-m12_A_A4_G5AAAAA03740.20 AA03
0641oq0-m13_A_A4_G5AAAAA00340.30 AA00
0651oq0-m14_A_A4_G5AAAAA00640.19 AA00
0661oq0-m15_A_A4_G5AAAAA08650.29 AA08
0671oq0-m16_A_A4_G5AAAAA00490.30 AA00
0681oq0-m17_A_A4_G5AAAAA00330.19 AA00
0691oq0-m18_A_A4_G5AAAAA08640.27 AA08
0701oq0-m19_A_A4_G5AAAAA00210.22 AA00
0711oq0-m1_A_A4_G5AAAAA08710.24 AA08
0721oq0-m20_A_A4_G5AAAAA00410.23 AA00
0731oq0-m2_A_A4_G5AAAAA00500.30 AA00
0741oq0-m3_A_A4_G5AAAAA00370.28 AA00
0751oq0-m4_A_A4_G5AAAAA08670.26 AA08
0761oq0-m5_A_A4_G5AAAAA08650.27 AA08
0771oq0-m6_A_A4_G5AAAAA08590.30 AA08
0781oq0-m7_A_A4_G5AAAAA08710.26 AA08
0791oq0-m8_A_A4_G5AAAAA00460.17 AA00
0801oq0-m9_A_A4_G5AAAAA00340.23 AA00
0811oq0-m10_A_G5_U6NANNANT00.73 AA03
0821oq0-m11_A_G5_U6NANNANT00.80 AA03
0831oq0-m12_A_G5_U6NANNANT00.64 AA09
0841oq0-m13_A_G5_U6NANNANT00.82 AA03
0851oq0-m14_A_G5_U6NANNANT00.70 AA03
0861oq0-m15_A_G5_U6NANNANT00.71 AA03
0871oq0-m16_A_G5_U6NANNANT00.75 AA03
0881oq0-m17_A_G5_U6NANNANT00.74 AA03
0891oq0-m18_A_G5_U6NANNANT00.69 AA09
0901oq0-m19_A_G5_U6NANNANT00.69 AA09
0911oq0-m1_A_G5_U6NANNANT00.75 AA03
0921oq0-m20_A_G5_U6NANNANT01.05 AA01
0931oq0-m2_A_G5_U6NANNANT00.73 AA03
0941oq0-m3_A_G5_U6NANNANT00.78 AA03
0951oq0-m4_A_G5_U6NANNANT00.73 AA03
0961oq0-m5_A_G5_U6NANNANT00.72 AA03
0971oq0-m6_A_G5_U6NANNANT00.73 AA09
0981oq0-m7_A_G5_U6NANNANT00.74 AA03
0991oq0-m8_A_G5_U6NANNANT00.72 AA03
1001oq0-m9_A_G5_U6NANNANT01.06 AA01
1011oq0-m10_A_U6_U7NANNANT01.70 OP29
1021oq0-m11_A_U6_U7NANNANT01.72 OP29
1031oq0-m12_A_U6_U7NANNANT01.71 OP29
1041oq0-m13_A_U6_U7NANNANT01.40 OP29
1051oq0-m14_A_U6_U7NANNANT01.74 OP29
1061oq0-m15_A_U6_U7NANNANT01.71 OP29
1071oq0-m16_A_U6_U7NANNANT01.63 OP29
1081oq0-m17_A_U6_U7NANNANT01.61 OP29
1091oq0-m18_A_U6_U7NANNANT01.66 OP29
1101oq0-m19_A_U6_U7NANNANT01.57 OP29
1111oq0-m1_A_U6_U7NANNANT01.49 OP29
1121oq0-m20_A_U6_U7NANNANT01.65 OP29
1131oq0-m2_A_U6_U7NANNANT01.71 OP29
1141oq0-m3_A_U6_U7NANNANT01.70 OP29
1151oq0-m4_A_U6_U7NANNANT01.73 OP29
1161oq0-m5_A_U6_U7NANNANT01.75 OP29
1171oq0-m6_A_U6_U7NANNANT01.55 OP29
1181oq0-m7_A_U6_U7NANNANT01.61 OP29
1191oq0-m8_A_U6_U7NANNANT01.71 OP29
1201oq0-m9_A_U6_U7NANNANT01.73 OP29
1211oq0-m10_A_U7_G8NANNANT01.54 IC06
1221oq0-m11_A_U7_G8NANNANT01.60 IC06
1231oq0-m12_A_U7_G8NANNANT01.12 OP20
1241oq0-m13_A_U7_G8NANNANT00.83 OP11
1251oq0-m14_A_U7_G8NANNANT00.90 OP11
1261oq0-m15_A_U7_G8NANNANT01.13 OP20
1271oq0-m16_A_U7_G8NANNANT01.11 OP20
1281oq0-m17_A_U7_G8NANNANT01.10 OP20
1291oq0-m18_A_U7_G8NANNANT01.23 OP20
1301oq0-m19_A_U7_G8NANNANT01.16 OP20
1311oq0-m1_A_U7_G8NANNANT01.09 OP20
1321oq0-m20_A_U7_G8NANNANT01.12 OP20
1331oq0-m2_A_U7_G8NANNANT01.13 OP20
1341oq0-m3_A_U7_G8NANNANT01.58 IC06
1351oq0-m4_A_U7_G8NANNANT01.54 IC06
1361oq0-m5_A_U7_G8NANNANT01.53 IC06
1371oq0-m6_A_U7_G8NANNANT01.11 OP20
1381oq0-m7_A_U7_G8NANNANT01.10 OP20
1391oq0-m8_A_U7_G8NANNANT01.13 OP20
1401oq0-m9_A_U7_G8NANNANT01.58 IC06
1411oq0-m10_A_G8_G9NANNANT01.47 IC04
1421oq0-m11_A_G8_G9NANNANT01.46 IC04
1431oq0-m12_A_G8_G9NANNANT00.94 OP20
1441oq0-m13_A_G8_G9NANNANT01.42 IC04
1451oq0-m14_A_G8_G9NANNANT01.03 IC04
1461oq0-m15_A_G8_G9NANNANT01.24 IC04
1471oq0-m16_A_G8_G9NANNANT00.78 OP20
1481oq0-m17_A_G8_G9NANNANT00.69 OP20
1491oq0-m18_A_G8_G9NANNANT01.16 IC04
1501oq0-m19_A_G8_G9NANNANT01.24 IC04
1511oq0-m1_A_G8_G9NANNANT01.55 IC04
1521oq0-m20_A_G8_G9NANNANT01.60 IC04
1531oq0-m2_A_G8_G9NANNANT01.29 IC04
1541oq0-m3_A_G8_G9NANNANT01.84 IC04
1551oq0-m4_A_G8_G9NANNANT01.82 IC04
1561oq0-m5_A_G8_G9NANNANT01.61 IC04
1571oq0-m6_A_G8_G9NANNANT01.14 IC04
1581oq0-m7_A_G8_G9NANNANT00.83 OP20
1591oq0-m8_A_G8_G9NANNANT01.72 IC04
1601oq0-m9_A_G8_G9NANNANT01.37 IC04
1611oq0-m10_A_G9_G10NANNANT01.39 OP19
1621oq0-m11_A_G9_G10NANNANT01.40 OP19
1631oq0-m12_A_G9_G10NANNANT01.35 OP19
1641oq0-m13_A_G9_G10NANNANT01.41 OP19
1651oq0-m14_A_G9_G10NANNANT01.39 OP19
1661oq0-m15_A_G9_G10NANNANT01.38 OP19
1671oq0-m16_A_G9_G10NANNANT01.30 OP20
1681oq0-m17_A_G9_G10NANNANT01.81 OP22
1691oq0-m18_A_G9_G10NANNANT01.39 OP19
1701oq0-m19_A_G9_G10NANNANT01.38 OP19
1711oq0-m1_A_G9_G10NANNANT01.45 OP19
1721oq0-m20_A_G9_G10NANNANT01.31 OP20
1731oq0-m2_A_G9_G10NANNANT01.37 OP19
1741oq0-m3_A_G9_G10NANNANT01.45 IC06
1751oq0-m4_A_G9_G10NANNANT01.49 IC06
1761oq0-m5_A_G9_G10NANNANT01.94 OP22
1771oq0-m6_A_G9_G10NANNANT01.41 OP19
1781oq0-m7_A_G9_G10NANNANT01.40 IC06
1791oq0-m8_A_G9_G10NANNANT01.52 IC06
1801oq0-m9_A_G9_G10NANNANT01.90 OP22
1811oq0-m10_A_G10_C11NANNANT00.65 BA08
1821oq0-m11_A_G10_C11NANNANT00.66 BA08
1831oq0-m12_A_G10_C11NANNANT00.65 BA08
1841oq0-m13_A_G10_C11NANNANT00.66 BA08
1851oq0-m14_A_G10_C11NANNANT00.69 BA08
1861oq0-m15_A_G10_C11NANNANT00.66 BA08
1871oq0-m16_A_G10_C11NANNANT00.68 BA08
1881oq0-m17_A_G10_C11NANNANT00.64 BA08
1891oq0-m18_A_G10_C11NANNANT00.65 BA08
1901oq0-m19_A_G10_C11NANNANT00.62 BA08
1911oq0-m1_A_G10_C11NANNANT00.62 BA08
1921oq0-m20_A_G10_C11NANNANT00.67 BA08
1931oq0-m2_A_G10_C11NANNANT00.63 BA08
1941oq0-m3_A_G10_C11NANNANT00.68 BA08
1951oq0-m4_A_G10_C11NANNANT00.67 BA08
1961oq0-m5_A_G10_C11NANNANT00.67 BA08
1971oq0-m6_A_G10_C11NANNANT00.64 BA08
1981oq0-m7_A_G10_C11NANNANT00.64 BA08
1991oq0-m8_A_G10_C11NANNANT00.69 BA08
2001oq0-m9_A_G10_C11NANNANT00.65 BA08
2011oq0-m10_A_C11_U12AAAAA04800.20 AA04
2021oq0-m11_A_C11_U12AAAAA08590.28 AA08
2031oq0-m12_A_C11_U12AAAAA00580.25 AA00
2041oq0-m13_A_C11_U12AAAAA00180.31 AA00
2051oq0-m14_A_C11_U12AAAAA00640.26 AA00
2061oq0-m15_A_C11_U12AAAAA00350.25 AA00
2071oq0-m16_A_C11_U12AAAAA00710.26 AA00
2081oq0-m17_A_C11_U12AAAAA04760.22 AA04
2091oq0-m18_A_C11_U12AAAAA04790.20 AA04
2101oq0-m19_A_C11_U12AAAAA00610.26 AA00
2111oq0-m1_A_C11_U12AAAAA00690.21 AA00
2121oq0-m20_A_C11_U12AAAAA00580.30 AA00
2131oq0-m2_A_C11_U12AAAAA00680.19 AA00
2141oq0-m3_A_C11_U12AAAAA00690.26 AA00
2151oq0-m4_A_C11_U12AAAAA00600.27 AA00
2161oq0-m5_A_C11_U12AAAAA00310.26 AA00
2171oq0-m6_A_C11_U12AAAAA00570.25 AA00
2181oq0-m7_A_C11_U12AAAAA00620.27 AA00
2191oq0-m8_A_C11_U12AAAAA00520.27 AA00
2201oq0-m9_A_C11_U12AAAAA00540.17 AA00
2211oq0-m10_A_U12_C13AAAAA00560.29 AA00
2221oq0-m11_A_U12_C13AAAAA00470.32 AA00
2231oq0-m12_A_U12_C13AAAAA00390.31 AA00
2241oq0-m13_A_U12_C13AAAAA00260.33 AA00
2251oq0-m14_A_U12_C13AAAAA00350.33 AA00
2261oq0-m15_A_U12_C13AAAAA00670.26 AA00
2271oq0-m16_A_U12_C13AAAAA00320.36 AA00
2281oq0-m17_A_U12_C13AAAAA00570.28 AA00
2291oq0-m18_A_U12_C13AAAAA00560.29 AA00
2301oq0-m19_A_U12_C13AAAAA00400.30 AA00
2311oq0-m1_A_U12_C13AAAAA00390.31 AA00
2321oq0-m20_A_U12_C13AAAAA00320.34 AA00
2331oq0-m2_A_U12_C13AAAAA00390.32 AA00
2341oq0-m3_A_U12_C13AAAAA00320.37 AA00
2351oq0-m4_A_U12_C13AAAAA00500.29 AA00
2361oq0-m5_A_U12_C13AAAAA00770.26 AA00
2371oq0-m6_A_U12_C13AAAAA00540.28 AA00
2381oq0-m7_A_U12_C13AAAAA00570.29 AA00
2391oq0-m8_A_U12_C13AAAAA00750.26 AA00
2401oq0-m9_A_U12_C13AAAAA00450.32 AA00
2411oq0-m10_A_C13_U14AAAAA08790.18 AA08
2421oq0-m11_A_C13_U14AAAAA00540.26 AA00
2431oq0-m12_A_C13_U14AAAAA00640.25 AA00
2441oq0-m13_A_C13_U14AAAAA00430.29 AA00
2451oq0-m14_A_C13_U14AAAAA00570.28 AA00
2461oq0-m15_A_C13_U14AAAAA00470.31 AA00
2471oq0-m16_A_C13_U14AAAAA00500.28 AA00
2481oq0-m17_A_C13_U14AAAAA08780.19 AA08
2491oq0-m18_A_C13_U14AAAAA00570.16 AA00
2501oq0-m19_A_C13_U14AAAAA00500.35 AA00
2511oq0-m1_A_C13_U14AAAAA00510.28 AA00
2521oq0-m20_A_C13_U14AAAAA00550.27 AA00
2531oq0-m2_A_C13_U14AAAAA00430.28 AA00
2541oq0-m3_A_C13_U14AAAAA00400.30 AA00
2551oq0-m4_A_C13_U14AAAAA08760.25 AA08
2561oq0-m5_A_C13_U14AAAAA00360.30 AA00
2571oq0-m6_A_C13_U14AAAAA00500.34 AA00
2581oq0-m7_A_C13_U14AAAAA00660.17 AA00
2591oq0-m8_A_C13_U14AAAAA00460.27 AA00
2601oq0-m9_A_C13_U14AAAAA00390.29 AA00
2611oq0-m10_A_U14_C15AAAAA08690.35 AA08
2621oq0-m11_A_U14_C15AAAAA00660.22 AA00
2631oq0-m12_A_U14_C15AAAAA00540.25 AA00
2641oq0-m13_A_U14_C15AAAAA08650.27 AA08
2651oq0-m14_A_U14_C15AAAAA00640.23 AA00
2661oq0-m15_A_U14_C15AAAAA00680.23 AA00
2671oq0-m16_A_U14_C15AAAAA00670.22 AA00
2681oq0-m17_A_U14_C15AAAAA00600.28 AA00
2691oq0-m18_A_U14_C15AAAAA08740.29 AA08
2701oq0-m19_A_U14_C15AAAAA04620.29 AA04
2711oq0-m1_A_U14_C15AAAAA00580.24 AA00
2721oq0-m20_A_U14_C15AAAAA00660.22 AA00
2731oq0-m2_A_U14_C15AAAAA08700.25 AA08
2741oq0-m3_A_U14_C15AAAAA08650.27 AA08
2751oq0-m4_A_U14_C15AAAAA00500.31 AA00
2761oq0-m5_A_U14_C15AAAAA00580.25 AA00
2771oq0-m6_A_U14_C15AAAAA00640.23 AA00
2781oq0-m7_A_U14_C15AAAAA08760.25 AA08
2791oq0-m8_A_U14_C15AAAAA08740.25 AA08
2801oq0-m9_A_U14_C15AAAAA00660.22 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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