DNATCO v4.1: results

CRYSTAL STRUCTURE OF NF-kB(p50)2 COMPLEXED TO A HIGH-AFFINITY RNA APTAMER

Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1ooa_C_C1_A2	AAu	AA12	74	0.28	AA12
02	1ooa_C_A2_U3	AAw	AA01	73	0.26	AA01
03	1ooa_C_U3_A4	AAA	AA00	54	0.41	AA00
04	1ooa_C_A4_C5	AAA	AA00	91	0.12	AA00
05	1ooa_C_C5_U6	AAw	AA01	53	0.38	AA01
06	1ooa_C_U6_U7	AAA	AA08	91	0.21	AA08
07	1ooa_C_U7_G8	NAN	NANT	0	0.76	AB02
08	1ooa_C_G8_A9	NAN	NANT	0	0.55	IC07
09	1ooa_C_A9_A10	AAA	AA00	27	0.43	AA00
10	1ooa_C_A10_A11	NAN	NANT	0	0.93	AB04
11	1ooa_C_A11_C12	AAA	AA04	68	0.20	AA04
12	1ooa_C_C12_U13	AAA	AA00	74	0.21	AA00
13	1ooa_C_U13_G14	NAN	NANT	0	0.61	AA08
14	1ooa_C_G14_U15	AAu	AA12	20	0.37	AA12
15	1ooa_C_U15_A16	NAN	NANT	0	1.31	OP05
16	1ooa_C_A16_A17	NAN	NANT	0	1.67	OP31
17	1ooa_C_A17_G18	AAw	AA06	16	0.51	AA06
18	1ooa_C_G18_G19	AAA	AA00	59	0.22	AA00
19	1ooa_C_G19_U20	AAA	AA00	96	0.12	AA00
20	1ooa_C_U20_U21	AAA	AA00	83	0.23	AA00
21	1ooa_C_U21_G22	AAA	AA09	21	0.76	AA09
22	1ooa_C_G22_G23	NAN	NANT	0	1.04	IC06
23	1ooa_C_G23_C24	NAN	NANT	0	1.46	OP26
24	1ooa_C_C24_G25	AAA	AA00	12	0.55	AA00
25	1ooa_C_G25_U26	AAA	AA00	85	0.14	AA00
26	1ooa_C_U26_A27	AAA	AA00	59	0.35	AA00
27	1ooa_C_A27_U28	AAA	AA00	79	0.16	AA00
28	1ooa_C_U28_G29	AAA	AA00	80	0.17	AA00
29	1ooa_D_C1_A2	AAA	AA00	19	0.30	AA00
30	1ooa_D_A2_U3	AAw	AA01	61	0.29	AA01
31	1ooa_D_U3_A4	AAA	AA00	60	0.24	AA00
32	1ooa_D_A4_C5	AAA	AA00	87	0.14	AA00
33	1ooa_D_C5_U6	AAw	AA01	82	0.32	AA01
34	1ooa_D_U6_U7	AAA	AA08	87	0.29	AA08
35	1ooa_D_U7_G8	NAN	NANT	0	1.05	OP24
36	1ooa_D_G8_A9	NAN	NANT	0	0.59	IC07
37	1ooa_D_A9_A10	AAA	AA00	34	0.45	AA00
38	1ooa_D_A10_A11	NAN	NANT	0	0.96	AB04
39	1ooa_D_A11_C12	AAA	AA00	20	0.25	AA00
40	1ooa_D_C12_U13	AAA	AA00	81	0.17	AA00
41	1ooa_D_U13_G14	NAN	NANT	0	0.43	AA05
42	1ooa_D_G14_U15	NAN	NANT	0	1.06	AA01
43	1ooa_D_U15_A16	NAN	NANT	0	0.98	OP18
44	1ooa_D_A16_A17	NAN	NANT	0	0.51	AA05
45	1ooa_D_A17_G18	AAw	AA01	24	0.42	AA01
46	1ooa_D_G18_G19	AAA	AA00	86	0.23	AA00
47	1ooa_D_G19_U20	AAA	AA00	87	0.14	AA00
48	1ooa_D_U20_U21	AAA	AA00	67	0.22	AA00
49	1ooa_D_U21_G22	AAA	AA08	50	0.65	AA08
50	1ooa_D_G22_G23	NAN	NANT	0	0.63	AA06
51	1ooa_D_G23_C24	NAN	NANT	0	1.37	AB02
52	1ooa_D_C24_G25	AAw	AA05	82	0.19	AA05
53	1ooa_D_G25_U26	AAA	AA08	46	0.30	AA08
54	1ooa_D_U26_A27	AAA	AA00	91	0.17	AA00
55	1ooa_D_A27_U28	AAA	AA00	82	0.23	AA00
56	1ooa_D_U28_G29	AAA	AA00	61	0.30	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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