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Conformers: ABBIImiBZICOPNSYNN
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DNA.RNA HYBRID DUPLEX CONTAINING A 5-PROPYNE DNA STRAND AND PURINE-RICH RNA STRAND, NMR, 4 STRUCTURES

Results of the assignment of 72 detected steps in 4 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011oo7-m1_A_G1_A2AAAAA00750.14 AA00
021oo7-m2_A_G1_A2AAAAA00730.16 AA00
031oo7-m3_A_G1_A2AAAAA00700.18 AA00
041oo7-m4_A_G1_A2AAAAA00730.15 AA00
051oo7-m1_A_A2_A3AAAAA00750.13 AA00
061oo7-m2_A_A2_A3AAAAA00640.14 AA00
071oo7-m3_A_A2_A3AAAAA00570.14 AA00
081oo7-m4_A_A2_A3AAAAA00660.13 AA00
091oo7-m1_A_A3_G4AAAAA00750.15 AA00
101oo7-m2_A_A3_G4AAAAA00710.16 AA00
111oo7-m3_A_A3_G4AAAAA00720.17 AA00
121oo7-m4_A_A3_G4AAAAA00730.18 AA00
131oo7-m1_A_G4_A5AAAAA00770.14 AA00
141oo7-m2_A_G4_A5AAAAA00730.17 AA00
151oo7-m3_A_G4_A5AAAAA00680.15 AA00
161oo7-m4_A_G4_A5AAAAA00720.15 AA00
171oo7-m1_A_A5_G6AAAAA00780.18 AA00
181oo7-m2_A_A5_G6AAAAA00700.20 AA00
191oo7-m3_A_A5_G6AAAAA00680.23 AA00
201oo7-m4_A_A5_G6AAAAA00800.17 AA00
211oo7-m1_A_G6_A7AAAAA00710.16 AA00
221oo7-m2_A_G6_A7AAAAA00690.18 AA00
231oo7-m3_A_G6_A7AAAAA00650.18 AA00
241oo7-m4_A_G6_A7AAAAA00760.16 AA00
251oo7-m1_A_A7_A8AAAAA00770.13 AA00
261oo7-m2_A_A7_A8AAAAA00660.17 AA00
271oo7-m3_A_A7_A8AAAAA00610.16 AA00
281oo7-m4_A_A7_A8AAAAA00780.14 AA00
291oo7-m1_A_A8_G9AAAAA00810.14 AA00
301oo7-m2_A_A8_G9AAAAA00740.16 AA00
311oo7-m3_A_A8_G9AAAAA00750.15 AA00
321oo7-m4_A_A8_G9AAAAA00750.14 AA00
331oo7-m1_A_G9_C10AAAAA00830.19 AA00
341oo7-m2_A_G9_C10AAAAA00890.16 AA00
351oo7-m3_A_G9_C10AAAAA00890.15 AA00
361oo7-m4_A_G9_C10AAAAA00930.14 AA00
371oo7-m1_B_DG1_5PC2BBBBB01720.21 BB01
381oo7-m2_B_DG1_5PC2NANNANT00.41 AA00
391oo7-m3_B_DG1_5PC2BBBBB01710.19 BB01
401oo7-m4_B_DG1_5PC2NANNANT00.39 AA00
411oo7-m1_B_5PC2_PDU3BBBBB00630.31 BB00
421oo7-m2_B_5PC2_PDU3NANNANT00.40 AA00
431oo7-m3_B_5PC2_PDU3BBBBB00480.39 BB00
441oo7-m4_B_5PC2_PDU3NANNANT00.39 AA00
451oo7-m1_B_PDU3_PDU4BBBBB01630.23 BB01
461oo7-m2_B_PDU3_PDU4NANNANT00.42 AA00
471oo7-m3_B_PDU3_PDU4BBBBB01480.27 BB01
481oo7-m4_B_PDU3_PDU4NANNANT00.44 AA00
491oo7-m1_B_PDU4_5PC5BBBBB01440.22 BB01
501oo7-m2_B_PDU4_5PC5NANNANT00.45 AA00
511oo7-m3_B_PDU4_5PC5BBBBB01300.21 BB01
521oo7-m4_B_PDU4_5PC5NANNANT00.49 AA00
531oo7-m1_B_5PC5_PDU6BBBBB00390.34 BB00
541oo7-m2_B_5PC5_PDU6NANNANT00.43 AA00
551oo7-m3_B_5PC5_PDU6BBBBB00280.44 BB00
561oo7-m4_B_5PC5_PDU6NANNANT00.46 AA00
571oo7-m1_B_PDU6_5PC7BBBBB01490.22 BB01
581oo7-m2_B_PDU6_5PC7NANNANT00.48 AA00
591oo7-m3_B_PDU6_5PC7BBBBB01330.23 BB01
601oo7-m4_B_PDU6_5PC7NANNANT00.49 AA00
611oo7-m1_B_5PC7_PDU8BBBBB00350.38 BB00
621oo7-m2_B_5PC7_PDU8NANNANT00.44 AA00
631oo7-m3_B_5PC7_PDU8BBBBB00320.38 BB00
641oo7-m4_B_5PC7_PDU8NANNANT00.43 AA00
651oo7-m1_B_PDU8_PDU9BBBBB01560.24 BB01
661oo7-m2_B_PDU8_PDU9NANNANT00.42 AA00
671oo7-m3_B_PDU8_PDU9BBBBB01660.23 BB01
681oo7-m4_B_PDU8_PDU9NANNANT00.41 AA00
691oo7-m1_B_PDU9_DC10BBBBB00460.29 BB00
701oo7-m2_B_PDU9_DC10AAAAA00710.34 AA00
711oo7-m3_B_PDU9_DC10BBBBB00590.32 BB00
721oo7-m4_B_PDU9_DC10AAAAA00710.33 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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