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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
RNA/DNA CHIMERA, NMR

Results of the assignment of 112 detected steps in 7 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011oka-m1_A_DT1_DC2BBBBB00320.37 BB00
0021oka-m2_A_DT1_DC2BBBBB00390.37 BB00
0031oka-m3_A_DT1_DC2BBBBB00330.41 BB00
0041oka-m4_A_DT1_DC2BBBBB00340.39 BB00
0051oka-m5_A_DT1_DC2BBBBB00310.36 BB00
0061oka-m6_A_DT1_DC2BBBBB00410.38 BB00
0071oka-m7_A_DT1_DC2BBBBB00410.38 BB00
0081oka-m1_A_DC2_DA3BBBBB00400.42 BB00
0091oka-m2_A_DC2_DA3BBBBB00400.39 BB00
0101oka-m3_A_DC2_DA3BBBBB00470.39 BB00
0111oka-m4_A_DC2_DA3BBBBB00370.40 BB00
0121oka-m5_A_DC2_DA3BBBBB00310.41 BB00
0131oka-m6_A_DC2_DA3BBBBB00430.39 BB00
0141oka-m7_A_DC2_DA3BBBBB00430.39 BB00
0151oka-m1_A_DA3_DT4BBBBB01270.30 BB01
0161oka-m2_A_DA3_DT4BBBBB01230.31 BB01
0171oka-m3_A_DA3_DT4BBBBB01290.29 BB01
0181oka-m4_A_DA3_DT4BBBBB01230.31 BB01
0191oka-m5_A_DA3_DT4BBBBB01200.31 BB01
0201oka-m6_A_DA3_DT4BBBBB01160.33 BB01
0211oka-m7_A_DA3_DT4BBBBB01160.33 BB01
0221oka-m1_A_DT4_DT5BBBBB00260.43 BB00
0231oka-m2_A_DT4_DT5BBBBB00260.44 BB00
0241oka-m3_A_DT4_DT5BBBBB00260.42 BB00
0251oka-m4_A_DT4_DT5BBBBB00260.44 BB00
0261oka-m5_A_DT4_DT5BBBBB00250.45 BB00
0271oka-m6_A_DT4_DT5BBBBB00180.46 BB00
0281oka-m7_A_DT4_DT5BBBBB00180.46 BB00
0291oka-m1_A_DT5_DT6BBBBB01340.28 BB01
0301oka-m2_A_DT5_DT6BBBBB00310.35 BB00
0311oka-m3_A_DT5_DT6BBBBB00270.35 BB00
0321oka-m4_A_DT5_DT6BBBBB00220.34 BB00
0331oka-m5_A_DT5_DT6BBBBB01310.28 BB01
0341oka-m6_A_DT5_DT6BBBBB01270.28 BB01
0351oka-m7_A_DT5_DT6BBBBB01270.28 BB01
0361oka-m1_A_DT6_DG7BBBBB00500.34 BB00
0371oka-m2_A_DT6_DG7BBBBB00500.35 BB00
0381oka-m3_A_DT6_DG7BBBBB00490.32 BB00
0391oka-m4_A_DT6_DG7BBBBB00510.35 BB00
0401oka-m5_A_DT6_DG7BBBBB00500.32 BB00
0411oka-m6_A_DT6_DG7BBBBB00440.36 BB00
0421oka-m7_A_DT6_DG7BBBBB00440.36 BB00
0431oka-m1_A_DG7_DG8BBBBB01380.28 BB01
0441oka-m2_A_DG7_DG8BBBBB01380.28 BB01
0451oka-m3_A_DG7_DG8BBBBB01370.28 BB01
0461oka-m4_A_DG7_DG8BBBBB01380.28 BB01
0471oka-m5_A_DG7_DG8BBBBB01410.26 BB01
0481oka-m6_A_DG7_DG8BBBBB01410.27 BB01
0491oka-m7_A_DG7_DG8BBBBB01410.27 BB01
0501oka-m1_A_DG8_DG9BBBBB01390.25 BB01
0511oka-m2_A_DG8_DG9BBBBB01320.26 BB01
0521oka-m3_A_DG8_DG9BBBBB01360.26 BB01
0531oka-m4_A_DG8_DG9BBBBB01360.26 BB01
0541oka-m5_A_DG8_DG9BBBBB01390.25 BB01
0551oka-m6_A_DG8_DG9BBBBB01370.26 BB01
0561oka-m7_A_DG8_DG9BBBBB01370.26 BB01
0571oka-m1_B_C1_C2AAAAA00680.24 AA00
0581oka-m2_B_C1_C2AAAAA00690.23 AA00
0591oka-m3_B_C1_C2AAAAA00580.28 AA00
0601oka-m4_B_C1_C2AAAAA00560.34 AA00
0611oka-m5_B_C1_C2AAAAA00710.22 AA00
0621oka-m6_B_C1_C2AAAAA00580.27 AA00
0631oka-m7_B_C1_C2AAAAA00580.27 AA00
0641oka-m1_B_C2_C3AAAAA00780.22 AA00
0651oka-m2_B_C2_C3AAAAA00790.21 AA00
0661oka-m3_B_C2_C3AAAAA00750.22 AA00
0671oka-m4_B_C2_C3AAAAA00730.23 AA00
0681oka-m5_B_C2_C3AAAAA00770.22 AA00
0691oka-m6_B_C2_C3AAAAA00700.24 AA00
0701oka-m7_B_C2_C3AAAAA00700.24 AA00
0711oka-m1_B_C3_A4AAAAA00680.25 AA00
0721oka-m2_B_C3_A4AAAAA00670.22 AA00
0731oka-m3_B_C3_A4AAAAA00640.24 AA00
0741oka-m4_B_C3_A4AAAAA00700.24 AA00
0751oka-m5_B_C3_A4AAAAA00670.25 AA00
0761oka-m6_B_C3_A4AAAAA00710.25 AA00
0771oka-m7_B_C3_A4AAAAA00710.25 AA00
0781oka-m1_B_A4_DA5A-BAB01150.39 AB01
0791oka-m2_B_A4_DA5A-BAB0180.42 AB01
0801oka-m3_B_A4_DA5A-BAB01100.42 AB01
0811oka-m4_B_A4_DA5A-BAB01170.41 AB01
0821oka-m5_B_A4_DA5A-BAB04300.41 AB04
0831oka-m6_B_A4_DA5A-BAB04260.43 AB04
0841oka-m7_B_A4_DA5A-BAB04260.43 AB04
0851oka-m1_B_DA5_DA6BBBBB00270.34 BB00
0861oka-m2_B_DA5_DA6BBBBB00230.35 BB00
0871oka-m3_B_DA5_DA6BBBBB00260.35 BB00
0881oka-m4_B_DA5_DA6BBBBB00230.35 BB00
0891oka-m5_B_DA5_DA6BBBBB00310.33 BB00
0901oka-m6_B_DA5_DA6BBBBB01210.27 BB01
0911oka-m7_B_DA5_DA6BBBBB01210.27 BB01
0921oka-m1_B_DA6_DT7BBBBB00270.42 BB00
0931oka-m2_B_DA6_DT7BBBBB00250.43 BB00
0941oka-m3_B_DA6_DT7BBBBB00280.41 BB00
0951oka-m4_B_DA6_DT7BBBBB00250.43 BB00
0961oka-m5_B_DA6_DT7BBBBB00210.42 BB00
0971oka-m6_B_DA6_DT7BBBBB00260.47 BB00
0981oka-m7_B_DA6_DT7BBBBB00260.47 BB00
0991oka-m1_B_DT7_DG8BBBBB00260.45 BB00
1001oka-m2_B_DT7_DG8BBBBB00220.46 BB00
1011oka-m3_B_DT7_DG8BBBBB00320.44 BB00
1021oka-m4_B_DT7_DG8BBBBB00240.46 BB00
1031oka-m5_B_DT7_DG8BBBBB00200.47 BB00
1041oka-m6_B_DT7_DG8BBBBB00180.49 BB00
1051oka-m7_B_DT7_DG8BBBBB00180.49 BB00
1061oka-m1_B_DG8_DA9BBBBB01440.22 BB01
1071oka-m2_B_DG8_DA9BBBBB01420.23 BB01
1081oka-m3_B_DG8_DA9BBBBB01420.24 BB01
1091oka-m4_B_DG8_DA9BBBBB01500.22 BB01
1101oka-m5_B_DG8_DA9BBBBB01460.22 BB01
1111oka-m6_B_DG8_DA9BBBBB01480.21 BB01
1121oka-m7_B_DG8_DA9BBBBB01480.21 BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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