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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of the GCM domain bound to DNA

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011odh_C_DC1001_DG1002NANNANT00.36 BB03
021odh_C_DG1002_DA1003B12BB04620.33 BB04
031odh_C_DA1003_DT1004BBwBB02830.20 BB02
041odh_C_DT1004_DG1005BBwBB02630.32 BB02
051odh_C_DG1005_DC1006BBBBB00640.25 BB00
061odh_C_DC1006_DG1007BBBBB00710.33 BB00
071odh_C_DG1007_DG1008BB2BB07700.25 BB07
081odh_C_DG1008_DG1009BBBBB00750.29 BB00
091odh_C_DG1009_DT1010BBBBB00590.43 BB00
101odh_C_DT1010_DG1011BBBBB00910.15 BB00
111odh_C_DG1011_DC1012BBwBB02740.21 BB02
121odh_C_DC1012_DA1013BBwBB03780.29 BB03
131odh_D_DT1014_DG1015BBwBB02730.31 BB02
141odh_D_DG1015_DC1016BBBBB00620.27 BB00
151odh_D_DC1016_DA1017BBBBB00800.21 BB00
161odh_D_DA1017_DC1018BBBBB00730.23 BB00
171odh_D_DC1018_DC1019B12BB04620.29 BB04
181odh_D_DC1019_DC1020BBBBB00310.31 BB00
191odh_D_DC1020_DG1021B12BB04740.17 BB04
201odh_D_DG1021_DC1022BBBBB00780.31 BB00
211odh_D_DC1022_DA1023BBBBB00880.15 BB00
221odh_D_DA1023_DT1024BBBBB00770.29 BB00
231odh_D_DT1024_DC1025BBBBB00590.23 BB00
241odh_D_DC1025_DG1026B12BB04650.23 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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