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Conformers: ABBIImiBZICOPNSYNN
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The Complex of a novel antibiotic with the Aminoacyl Site of the Bacterial Ribosome Revealed by X-Ray Crystallography.

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011o9m_A_G1403_C1404AAAAA00690.24 AA00
021o9m_A_C1404_G1405AAAAA00860.18 AA00
031o9m_A_G1405_U1406NANNANT01.78 OP17
041o9m_A_U1406_C1407NANNANT01.38 OP06
051o9m_A_C1407_A1408AAAAA00860.23 AA00
061o9m_A_A1408_C1409AAAAA00820.25 AA00
071o9m_A_C1409_A1410AAAAA00720.15 AA00
081o9m_A_A1410_C1411AAAAA00870.28 AA00
091o9m_A_C1411_C1412AAAAA00820.22 AA00
101o9m_A_C1412_G1488AAAAA00930.13 AA00
111o9m_A_G1488_G1489AAAAA00880.12 AA00
121o9m_A_G1489_U1490AAAAA00870.27 AA00
131o9m_A_U1490_G1491AAAAA00680.28 AA00
141o9m_A_G1491_A1492NANNANT01.16 OP29
151o9m_A_A1492_A1493NANNANT01.81 OP01
161o9m_A_A1493_G1494NANNANT00.36 AAS1
171o9m_A_G1494_U1495AAAAA00340.37 AA00
181o9m_A_U1495_C1496AAAAA08790.27 AA08
191o9m_A_C1496_G1497AAAAA00960.15 AA00
201o9m_A_G1497_C1498AAAAA00900.24 AA00
211o9m_B_G1403_C1404AAAAA00580.26 AA00
221o9m_B_C1404_G1405AAAAA00550.33 AA00
231o9m_B_G1405_U1406AAwAA01610.22 AA01
241o9m_B_U1406_C1407AAwAA11710.27 AA11
251o9m_B_C1407_A1408AAAAA08860.24 AA08
261o9m_B_A1408_C1409AAAAA00810.21 AA00
271o9m_B_C1409_A1410AAAAA00800.15 AA00
281o9m_B_A1410_C1411AAAAA00940.14 AA00
291o9m_B_C1411_C1412AAAAA00870.11 AA00
301o9m_B_C1412_G1488AAAAA00890.18 AA00
311o9m_B_G1488_G1489AAAAA00740.28 AA00
321o9m_B_G1489_U1490AAAAA00730.26 AA00
331o9m_B_U1490_G1491AAAAA00940.18 AA00
341o9m_B_G1491_A1492NANNANT00.96 OP14
351o9m_B_A1492_A1493AAAAA09710.19 AA09
361o9m_B_A1493_G1494NANNANT00.79 OP11
371o9m_B_G1494_U1495AAAAA00410.23 AA00
381o9m_B_U1495_C1496AAwAA01840.30 AA01
391o9m_B_C1496_G1497AAAAA08930.28 AA08
401o9m_B_G1497_C1498AAAAA00770.18 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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