DNATCO v4.1: results

PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES

Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1o3t_C_DG-5_DC-4	B12	BB04	11	0.59	BB04
02	1o3t_C_DC-4_DG-3	BBw	BB02	61	0.34	BB02
03	1o3t_C_DG-3_DA-2	BBB	BB00	48	0.42	BB00
04	1o3t_C_DA-2_DA-1	BBB	BB00	25	0.39	BB00
05	1o3t_C_DA-1_DA1	BBB	BB00	42	0.39	BB00
06	1o3t_C_DA1_DA2	BBw	BB02	63	0.20	BB02
07	1o3t_C_DA2_DA3	BBB	BB00	61	0.23	BB00
08	1o3t_C_DA3_DT4	BBw	BB02	52	0.25	BB02
09	1o3t_C_DT4_DG5	BBw	BB02	44	0.34	BB02
10	1o3t_C_DG5_DC6	BBw	BB02	40	0.43	BB02
11	1o3t_C_DC6_DG7	NAN	NANT	0	0.95	BB02
12	1o3t_C_DG7_DA8	B12	BB04	35	0.53	BB04
13	1o3t_C_DA8_DT9	miB	BB12	59	0.33	BB12
14	1o3t_D_DC-3_DG-4	BB2	BB07	41	0.33	BB07
15	1o3t_D_DT-2_DC-3	BBB	BB00	19	0.27	BB00
16	1o3t_D_DT-1_DT-2	BBB	BB00	41	0.28	BB00
17	1o3t_D_DT1_DT-1	BBB	BB00	59	0.34	BB00
18	1o3t_D_DT2_DT1	BBB	BB00	38	0.32	BB00
19	1o3t_D_DT3_DT2	NAN	NANT	0	0.34	BB11
20	1o3t_D_DA4_DT3	BBw	BB02	38	0.29	BB02
21	1o3t_D_DC5_DA4	NAN	NANT	0	0.35	BB07
22	1o3t_D_DG6_DC5	BBB	BB00	23	0.24	BB00
23	1o3t_D_DC7_DG6	NAN	NANT	0	0.78	BB00
24	1o3t_D_DT8_DC7	NAN	NANT	0	0.64	BB00
25	1o3t_D_DA9_DT8	BBw	BB02	76	0.22	BB02
26	1o3t_D_DG10_DA9	BBB	BB00	39	0.44	BB00
27	1o3t_D_DA11_DG10	NAN	NANT	0	0.59	BB02
28	1o3t_D_DT12_DA11	B12	BB04	69	0.27	BB04
29	1o3t_D_DC13_DT12	BBB	BB00	71	0.26	BB00
30	1o3t_E_DC10_DT11	BBB	BB00	47	0.38	BB00
31	1o3t_E_DT11_DA12	B12	BB04	36	0.38	BB04
32	1o3t_E_DA12_DG13	BBw	BB02	56	0.23	BB02
33	1o3t_E_DG13_DA14	BBB	BB00	27	0.43	BB00
34	1o3t_E_DA14_DT15	BBw	BB02	47	0.32	BB02
35	1o3t_E_DT15_DC16	NAN	NANT	0	0.56	BB15
36	1o3t_E_DC16_DG17	NAN	NANT	0	0.52	BB04
37	1o3t_E_DG17_DC18	BBB	BB00	24	0.27	BB00
38	1o3t_E_DC18_DA19	BB2	BB07	52	0.27	BB07
39	1o3t_E_DA19_DT20	BBw	BB02	53	0.23	BB02
40	1o3t_E_DT20_DT21	BBw	BB02	75	0.23	BB02
41	1o3t_E_DT21_DT22	BBw	BB02	26	0.28	BB02
42	1o3t_E_DT22_DT23	BBB	BB00	59	0.31	BB00
43	1o3t_E_DT23_DT24	BBB	BB00	70	0.31	BB00
44	1o3t_E_DT24_DC25	BBB	BB00	71	0.19	BB00
45	1o3t_E_DC25_DG26	BBB	BB00	26	0.45	BB00
46	1o3t_F_DA15_DT14	BBw	BB02	42	0.35	BB02
47	1o3t_F_DG16_DA15	BB2	BB07	46	0.39	BB07
48	1o3t_F_DC17_DG16	NAN	NANT	0	0.63	BB11
49	1o3t_F_DG18_DC17	BBw	BB02	48	0.27	BB02
50	1o3t_F_DT19_DG18	BBB	BB00	64	0.26	BB00
51	1o3t_F_DA20_DT19	BBw	BB02	38	0.20	BB02
52	1o3t_F_DA21_DA20	BBB	BB00	31	0.33	BB00
53	1o3t_F_DA22_DA21	BBw	BB02	41	0.35	BB02
54	1o3t_F_DA23_DA22	BBB	BB00	54	0.26	BB00
55	1o3t_F_DA24_DA23	BBw	BB02	41	0.33	BB02
56	1o3t_F_DG25_DA24	BBw	BB11	69	0.48	BB11
57	1o3t_F_DC26_DG25	BBw	BB02	16	0.50	BB02
58	1o3t_F_DG27_DC26	NAN	NANT	0	1.10	BB08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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