Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1o3r_B_DA-2_DA-1 | miB | BB13 | 36 | 0.44 |
| 02 | 1o3r_B_DA-1_DA1 | BBB | BB00 | 70 | 0.27 |
| 03 | 1o3r_B_DA1_DA2 | BBw | BB02 | 57 | 0.19 |
| 04 | 1o3r_B_DA2_DA3 | BBB | BB00 | 44 | 0.33 |
| 05 | 1o3r_B_DA3_DT4 | BBw | BB02 | 71 | 0.16 |
| 06 | 1o3r_B_DT4_DG5 | BBB | BB00 | 65 | 0.29 |
| 07 | 1o3r_B_DG5_DC6 | BBw | BB02 | 23 | 0.41 |
| 08 | 1o3r_B_DC6_DG7 | NAN | NANT | 0 | 1.05 |
| 09 | 1o3r_B_DG7_DA8 | NAN | NANT | 0 | 0.60 |
| 10 | 1o3r_B_DA8_DT9 | BBw | BB02 | 58 | 0.30 |
| 11 | 1o3r_C_DT-1_DT-2 | NAN | NANT | 0 | 0.30 |
| 12 | 1o3r_C_DT1_DT-1 | BBw | BB02 | 74 | 0.24 |
| 13 | 1o3r_C_DT2_DT1 | BBB | BB00 | 69 | 0.30 |
| 14 | 1o3r_C_DT3_DT2 | BBB | BB00 | 63 | 0.29 |
| 15 | 1o3r_C_DA4_DT3 | BBB | BB00 | 64 | 0.26 |
| 16 | 1o3r_C_DC5_DA4 | B12 | BB04 | 38 | 0.35 |
| 17 | 1o3r_C_DG6_DC5 | NAN | NANT | 0 | 0.36 |
| 18 | 1o3r_C_DC7_DG6 | NAN | NANT | 0 | 0.56 |
| 19 | 1o3r_C_DT8_DC7 | NAN | NANT | 0 | 0.72 |
| 20 | 1o3r_C_DA9_DT8 | BBw | BB02 | 69 | 0.19 |
| 21 | 1o3r_C_DG10_DA9 | BBB | BB00 | 40 | 0.41 |
| 22 | 1o3r_C_DA11_DG10 | BBw | BB02 | 64 | 0.29 |
| 23 | 1o3r_C_DT12_DA11 | BBB | BB00 | 54 | 0.28 |
| 24 | 1o3r_C_DC13_DT12 | BBB | BB00 | 57 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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