Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, REGULARIZED MEAN STRUCTURE, REFINEMENT WITH TORSION ANGLE AND BASE-BASE POSITIONAL DATABASE POTENTIALS AND DIPOLAR COUPLINGS
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1o15_A_G1_G2 | AAA | AA00 | 95 | 0.19 |
| 02 | 1o15_A_G2_C3 | AAA | AA00 | 95 | 0.20 |
| 03 | 1o15_A_C3_G4 | AAA | AA00 | 97 | 0.21 |
| 04 | 1o15_A_G4_A5 | AAA | AA00 | 91 | 0.22 |
| 05 | 1o15_A_A5_U6 | AAA | AA00 | 91 | 0.30 |
| 06 | 1o15_A_U6_A7 | ICL | IC01 | 77 | 0.36 |
| 07 | 1o15_A_A7_C8 | OPN | OP15 | 60 | 0.33 |
| 08 | 1o15_A_C8_C9 | AAA | AA00 | 95 | 0.24 |
| 09 | 1o15_A_C9_A10 | AAA | AA00 | 78 | 0.34 |
| 10 | 1o15_A_A10_G11 | AAA | AA00 | 85 | 0.26 |
| 11 | 1o15_A_G11_C12 | AAA | AA00 | 99 | 0.14 |
| 12 | 1o15_A_C12_C13 | AAA | AA00 | 89 | 0.25 |
| 13 | 1o15_A_C13_G14 | AAA | AA00 | 94 | 0.32 |
| 14 | 1o15_A_G14_A15 | OPN | OP04 | 78 | 0.32 |
| 15 | 1o15_A_A15_A16 | AAA | AA00 | 91 | 0.21 |
| 16 | 1o15_A_A16_A17 | AAA | AA00 | 65 | 0.32 |
| 17 | 1o15_A_A17_G18 | NAN | NANT | 0 | 0.90 |
| 18 | 1o15_A_G18_G19 | AAA | AA00 | 84 | 0.23 |
| 19 | 1o15_A_G19_C20 | AAA | AA00 | 97 | 0.24 |
| 20 | 1o15_A_C20_C21 | AAA | AA00 | 77 | 0.41 |
| 21 | 1o15_A_C21_C22 | ICL | IC01 | 67 | 0.24 |
| 22 | 1o15_A_C22_U23 | BB2 | BB07 | 26 | 0.66 |
| 23 | 1o15_A_U23_U24 | NAN | NANT | 0 | 0.90 |
| 24 | 1o15_A_U24_G25 | NAN | NANT | 0 | 1.05 |
| 25 | 1o15_A_G25_G26 | A-B | AB05 | 61 | 0.42 |
| 26 | 1o15_A_G26_C27 | NAN | NANT | 0 | 0.68 |
| 27 | 1o15_A_C27_A28 | NAN | NANT | 0 | 1.14 |
| 28 | 1o15_A_A28_G29 | AAA | AA00 | 77 | 0.26 |
| 29 | 1o15_A_G29_C30 | AAA | AA00 | 90 | 0.23 |
| 30 | 1o15_A_C30_G31 | AAA | AA00 | 98 | 0.21 |
| 31 | 1o15_A_G31_U32 | AAA | AA00 | 92 | 0.24 |
| 32 | 1o15_A_U32_C33 | AAA | AA00 | 80 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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