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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE

Results of the assignment of 73 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011o0c_B_G902_G903AAAAA00630.25 AA00
021o0c_B_G903_G904AAAAA00730.26 AA00
031o0c_B_G904_G905AAwAA01840.20 AA01
041o0c_B_G905_U906AAAAA00810.19 AA00
051o0c_B_U906_A907NANNANT00.45 AA01
061o0c_B_A907_U908NANNANT00.46 OP11
071o0c_B_U908_C909NANNANT01.06 IC02
081o0c_B_C909_G910NANNANT01.13 OP07
091o0c_B_G910_C911AAAAA00390.29 AA00
101o0c_B_C911_C912AAwAA01970.15 AA01
111o0c_B_C912_A913AAAAA08680.47 AA08
121o0c_B_A913_A914AAwAA01270.59 AA01
131o0c_B_A914_G915AAAAA08420.65 AA08
141o0c_B_G915_C916NANNANT01.75 OP1S
151o0c_B_C916_G918NANNANT01.92 OP29
161o0c_B_G918_G919NANNANT01.05 AA07
171o0c_B_G919_U920NANNANT00.77 OP15
181o0c_B_U920_A921NANNANT00.83 OP06
191o0c_B_A921_A922NANNANT00.75 IC07
201o0c_B_A922_G923AAAAA08740.44 AA08
211o0c_B_G923_G924AAAAA00830.15 AA00
221o0c_B_G924_C925AAAAA00810.11 AA00
231o0c_B_C925_A926AAAAA00520.42 AA00
241o0c_B_A926_C927AAAAA00740.31 AA00
251o0c_B_C927_C928AAAAA00670.24 AA00
261o0c_B_C928_G929AAwAA01870.21 AA01
271o0c_B_G929_G930AAAAA08900.15 AA08
281o0c_B_G930_A931AAAAA00700.26 AA00
291o0c_B_A931_U932AAwAA01870.23 AA01
301o0c_B_U932_U933AAAAA08770.34 AA08
311o0c_B_U933_C934NANNANT00.62 OP29
321o0c_B_C934_U935NANNANT00.69 OP16
331o0c_B_U935_G936NANNANT01.33 OP17
341o0c_B_G936_A937NANNANT00.94 OP01
351o0c_B_A937_U938AAAAA00300.49 AA00
361o0c_B_U938_U939AAAAA08320.39 AA08
371o0c_B_U939_C940AAAAA00540.39 AA00
381o0c_B_C940_C941AAwAA06420.40 AA06
391o0c_B_C941_G942AAAAA08840.16 AA08
401o0c_B_G942_G943AAAAA00790.21 AA00
411o0c_B_G943_C944AAAAA08780.20 AA08
421o0c_B_C944_A945NANNANT00.74 IC02
431o0c_B_A945_U946NANNANT01.50 OP31
441o0c_B_U946_U947NANNANT00.99 OP01
451o0c_B_U947_C948NANNANT00.90 AA03
461o0c_B_C948_C949NANNANT01.59 OP06
471o0c_B_C949_G950AAAAA00770.22 AA00
481o0c_B_G950_A951AAAAA00930.10 AA00
491o0c_B_A951_G952AAwAA01790.25 AA01
501o0c_B_G952_G953AAAAA08670.29 AA08
511o0c_B_G953_U954AAAAA00390.24 AA00
521o0c_B_U954_U955AAAAA00490.29 AA00
531o0c_B_U955_C956OPNOP04790.12 OP04
541o0c_B_C956_G957AAAAA08800.31 AA08
551o0c_B_G957_A958NANNANT00.72 AB04
561o0c_B_A958_A959NANNANT00.47 OP04
571o0c_B_A959_U960AAwAA01200.61 AA01
581o0c_B_U960_C961NANNANT00.50 OP12
591o0c_B_C961_C962AAAAA00730.19 AA00
601o0c_B_C962_U963AAAAA00260.29 AA00
611o0c_B_U963_C964AAAAA08720.29 AA08
621o0c_B_C964_G965AAwAA10700.16 AA10
631o0c_B_G965_U966AAAAA08790.23 AA08
641o0c_B_U966_A967AAAAA00830.12 AA00
651o0c_B_A967_C968AAAAA00860.17 AA00
661o0c_B_C968_C969AAAAA00810.18 AA00
671o0c_B_C969_C970AAAAA00870.20 AA00
681o0c_B_C970_C971AAAAA00890.19 AA00
691o0c_B_C971_A972NANNANT00.73 AA12
701o0c_B_A972_G973NANNANT00.65 OP31
711o0c_B_G973_C974NANNANT01.07 OP25
721o0c_B_C974_C975NANNANT00.97 OP31
731o0c_B_C975_A976AAAAA00230.41 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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