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Conformers: ABBIImiBZICOPNSYNN
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HIV-1 POLYPURINE HYBRID, R(GAGGACUG):D(CAGTCCTC), NMR, 18 STRUCTURES

Results of the assignment of 252 detected steps in 18 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011nxr-m10_A_DC1_DA2BBwBB16250.71 BB16
0021nxr-m11_A_DC1_DA2NANNANT00.39 AB04
0031nxr-m12_A_DC1_DA2BBwBB16270.71 BB16
0041nxr-m13_A_DC1_DA2A-BAB0180.43 AB01
0051nxr-m14_A_DC1_DA2A-BAB0190.42 AB01
0061nxr-m15_A_DC1_DA2A-BAB0170.43 AB01
0071nxr-m16_A_DC1_DA2A-BAB0190.42 AB01
0081nxr-m17_A_DC1_DA2A-BAB0190.43 AB01
0091nxr-m18_A_DC1_DA2BBBBB0090.46 BB00
0101nxr-m1_A_DC1_DA2BBwBB16280.69 BB16
0111nxr-m2_A_DC1_DA2A-BAB0180.43 AB01
0121nxr-m3_A_DC1_DA2BBwBB16250.71 BB16
0131nxr-m4_A_DC1_DA2NANNANT00.40 AB04
0141nxr-m5_A_DC1_DA2BBwBB16140.76 BB16
0151nxr-m6_A_DC1_DA2NANNANT00.38 AB04
0161nxr-m7_A_DC1_DA2BBwBB16260.71 BB16
0171nxr-m8_A_DC1_DA2BBBBB00100.47 BB00
0181nxr-m9_A_DC1_DA2BBBBB00100.45 BB00
0191nxr-m10_A_DA2_DG3B-ABA05290.27 BA05
0201nxr-m11_A_DA2_DG3B-ABA05180.26 BA05
0211nxr-m12_A_DA2_DG3B-ABA05180.26 BA05
0221nxr-m13_A_DA2_DG3B-ABA05200.26 BA05
0231nxr-m14_A_DA2_DG3B-ABA05170.26 BA05
0241nxr-m15_A_DA2_DG3B-ABA05230.26 BA05
0251nxr-m16_A_DA2_DG3B-ABA05180.26 BA05
0261nxr-m17_A_DA2_DG3B-ABA05180.26 BA05
0271nxr-m18_A_DA2_DG3B-ABA05200.26 BA05
0281nxr-m1_A_DA2_DG3B-ABA05250.26 BA05
0291nxr-m2_A_DA2_DG3B-ABA05120.26 BA05
0301nxr-m3_A_DA2_DG3B-ABA05180.26 BA05
0311nxr-m4_A_DA2_DG3B-ABA05240.26 BA05
0321nxr-m5_A_DA2_DG3B-ABA05250.25 BA05
0331nxr-m6_A_DA2_DG3B-ABA05210.25 BA05
0341nxr-m7_A_DA2_DG3B-ABA05230.26 BA05
0351nxr-m8_A_DA2_DG3B-ABA05150.26 BA05
0361nxr-m9_A_DA2_DG3B-ABA05290.26 BA05
0371nxr-m10_A_DG3_DT4AAAAA02290.62 AA02
0381nxr-m11_A_DG3_DT4AAAAA02280.63 AA02
0391nxr-m12_A_DG3_DT4AAAAA02340.61 AA02
0401nxr-m13_A_DG3_DT4AAAAA02330.61 AA02
0411nxr-m14_A_DG3_DT4AAAAA02330.61 AA02
0421nxr-m15_A_DG3_DT4AAAAA02340.61 AA02
0431nxr-m16_A_DG3_DT4AAAAA02330.62 AA02
0441nxr-m17_A_DG3_DT4AAAAA02340.62 AA02
0451nxr-m18_A_DG3_DT4AAAAA02330.62 AA02
0461nxr-m1_A_DG3_DT4AAAAA02320.63 AA02
0471nxr-m2_A_DG3_DT4NANNANT00.50 AA00
0481nxr-m3_A_DG3_DT4NANNANT00.50 AA00
0491nxr-m4_A_DG3_DT4AAAAA02310.63 AA02
0501nxr-m5_A_DG3_DT4NANNANT00.50 AA00
0511nxr-m6_A_DG3_DT4AAAAA02310.64 AA02
0521nxr-m7_A_DG3_DT4AAAAA02300.62 AA02
0531nxr-m8_A_DG3_DT4AAAAA02310.63 AA02
0541nxr-m9_A_DG3_DT4AAAAA02340.60 AA02
0551nxr-m10_A_DT4_DC5NANNANT00.46 AA00
0561nxr-m11_A_DT4_DC5NANNANT00.47 AA00
0571nxr-m12_A_DT4_DC5NANNANT00.47 AA00
0581nxr-m13_A_DT4_DC5NANNANT00.47 AA00
0591nxr-m14_A_DT4_DC5NANNANT00.47 AA00
0601nxr-m15_A_DT4_DC5NANNANT00.47 AA00
0611nxr-m16_A_DT4_DC5NANNANT00.47 AA00
0621nxr-m17_A_DT4_DC5NANNANT00.47 AA00
0631nxr-m18_A_DT4_DC5NANNANT00.47 AA00
0641nxr-m1_A_DT4_DC5NANNANT00.47 AA00
0651nxr-m2_A_DT4_DC5NANNANT00.47 AA00
0661nxr-m3_A_DT4_DC5NANNANT00.47 AA00
0671nxr-m4_A_DT4_DC5NANNANT00.47 AA00
0681nxr-m5_A_DT4_DC5NANNANT00.47 AA00
0691nxr-m6_A_DT4_DC5NANNANT00.47 AA00
0701nxr-m7_A_DT4_DC5NANNANT00.47 AA00
0711nxr-m8_A_DT4_DC5NANNANT00.47 AA00
0721nxr-m9_A_DT4_DC5NANNANT00.47 AA00
0731nxr-m10_A_DC5_DC6AAAAA00390.54 AA00
0741nxr-m11_A_DC5_DC6NANNANT00.54 AA00
0751nxr-m12_A_DC5_DC6NANNANT00.53 AA00
0761nxr-m13_A_DC5_DC6NANNANT00.54 AA00
0771nxr-m14_A_DC5_DC6NANNANT00.53 AA00
0781nxr-m15_A_DC5_DC6NANNANT00.54 AA00
0791nxr-m16_A_DC5_DC6NANNANT00.54 AA00
0801nxr-m17_A_DC5_DC6NANNANT00.54 AA00
0811nxr-m18_A_DC5_DC6NANNANT00.54 AA00
0821nxr-m1_A_DC5_DC6NANNANT00.55 AA00
0831nxr-m2_A_DC5_DC6NANNANT00.55 AA00
0841nxr-m3_A_DC5_DC6NANNANT00.55 AA00
0851nxr-m4_A_DC5_DC6NANNANT00.55 AA00
0861nxr-m5_A_DC5_DC6NANNANT00.55 AA00
0871nxr-m6_A_DC5_DC6NANNANT00.55 AA00
0881nxr-m7_A_DC5_DC6AAAAA00430.54 AA00
0891nxr-m8_A_DC5_DC6NANNANT00.54 AA00
0901nxr-m9_A_DC5_DC6AAAAA00500.52 AA00
0911nxr-m10_A_DC6_DT7NANNANT00.46 AA00
0921nxr-m11_A_DC6_DT7NANNANT00.45 AA00
0931nxr-m12_A_DC6_DT7AAAAA02210.53 AA02
0941nxr-m13_A_DC6_DT7AAAAA02220.53 AA02
0951nxr-m14_A_DC6_DT7AAAAA02210.53 AA02
0961nxr-m15_A_DC6_DT7AAAAA02200.53 AA02
0971nxr-m16_A_DC6_DT7AAAAA02200.52 AA02
0981nxr-m17_A_DC6_DT7AAAAA02180.53 AA02
0991nxr-m18_A_DC6_DT7AAAAA02210.53 AA02
1001nxr-m1_A_DC6_DT7AAAAA02140.53 AA02
1011nxr-m2_A_DC6_DT7AAAAA02140.54 AA02
1021nxr-m3_A_DC6_DT7AAAAA02140.53 AA02
1031nxr-m4_A_DC6_DT7AAAAA02180.53 AA02
1041nxr-m5_A_DC6_DT7AAAAA02150.54 AA02
1051nxr-m6_A_DC6_DT7AAAAA02150.54 AA02
1061nxr-m7_A_DC6_DT7AAAAA02160.53 AA02
1071nxr-m8_A_DC6_DT7NANNANT00.46 AA00
1081nxr-m9_A_DC6_DT7AAAAA02150.53 AA02
1091nxr-m10_A_DT7_DC8NANNANT00.53 AA02
1101nxr-m11_A_DT7_DC8NANNANT00.56 AA02
1111nxr-m12_A_DT7_DC8NANNANT00.52 AA02
1121nxr-m13_A_DT7_DC8NANNANT00.51 AA02
1131nxr-m14_A_DT7_DC8NANNANT00.52 AA02
1141nxr-m15_A_DT7_DC8NANNANT00.53 AA02
1151nxr-m16_A_DT7_DC8NANNANT00.54 AA02
1161nxr-m17_A_DT7_DC8NANNANT00.52 AA02
1171nxr-m18_A_DT7_DC8NANNANT00.51 AA02
1181nxr-m1_A_DT7_DC8NANNANT00.45 AA00
1191nxr-m2_A_DT7_DC8NANNANT00.45 AA00
1201nxr-m3_A_DT7_DC8NANNANT00.46 AA00
1211nxr-m4_A_DT7_DC8NANNANT00.56 AA02
1221nxr-m5_A_DT7_DC8NANNANT00.47 AA00
1231nxr-m6_A_DT7_DC8NANNANT00.58 AA02
1241nxr-m7_A_DT7_DC8NANNANT00.46 AA00
1251nxr-m8_A_DT7_DC8NANNANT00.55 AA02
1261nxr-m9_A_DT7_DC8NANNANT00.45 AA00
1271nxr-m10_B_G1_A2AAAAA00570.37 AA00
1281nxr-m11_B_G1_A2AAAAA00480.42 AA00
1291nxr-m12_B_G1_A2AAAAA00570.36 AA00
1301nxr-m13_B_G1_A2AAAAA00570.36 AA00
1311nxr-m14_B_G1_A2AAAAA00570.36 AA00
1321nxr-m15_B_G1_A2AAAAA00560.39 AA00
1331nxr-m16_B_G1_A2AAAAA00560.40 AA00
1341nxr-m17_B_G1_A2AAAAA00550.37 AA00
1351nxr-m18_B_G1_A2AAAAA00570.36 AA00
1361nxr-m1_B_G1_A2AAAAA00450.46 AA00
1371nxr-m2_B_G1_A2AAAAA00480.42 AA00
1381nxr-m3_B_G1_A2AAAAA00420.46 AA00
1391nxr-m4_B_G1_A2AAAAA00560.39 AA00
1401nxr-m5_B_G1_A2AAAAA00530.41 AA00
1411nxr-m6_B_G1_A2AAAAA00490.42 AA00
1421nxr-m7_B_G1_A2AAAAA00400.49 AA00
1431nxr-m8_B_G1_A2AAAAA00530.42 AA00
1441nxr-m9_B_G1_A2AAAAA00490.42 AA00
1451nxr-m10_B_A2_G3AAAAA00650.20 AA00
1461nxr-m11_B_A2_G3AAAAA00690.20 AA00
1471nxr-m12_B_A2_G3AAAAA00680.20 AA00
1481nxr-m13_B_A2_G3AAAAA00600.19 AA00
1491nxr-m14_B_A2_G3AAAAA00680.20 AA00
1501nxr-m15_B_A2_G3AAAAA00600.19 AA00
1511nxr-m16_B_A2_G3AAAAA00600.19 AA00
1521nxr-m17_B_A2_G3AAAAA00620.19 AA00
1531nxr-m18_B_A2_G3AAAAA00600.19 AA00
1541nxr-m1_B_A2_G3AAAAA00670.23 AA00
1551nxr-m2_B_A2_G3AAAAA00660.21 AA00
1561nxr-m3_B_A2_G3AAAAA00700.21 AA00
1571nxr-m4_B_A2_G3AAAAA00660.21 AA00
1581nxr-m5_B_A2_G3AAAAA00650.21 AA00
1591nxr-m6_B_A2_G3AAAAA00650.21 AA00
1601nxr-m7_B_A2_G3AAAAA00650.24 AA00
1611nxr-m8_B_A2_G3AAAAA00680.24 AA00
1621nxr-m9_B_A2_G3AAAAA00730.20 AA00
1631nxr-m10_B_G3_G4AAAAA04960.17 AA04
1641nxr-m11_B_G3_G4AAAAA04930.20 AA04
1651nxr-m12_B_G3_G4AAAAA04960.19 AA04
1661nxr-m13_B_G3_G4AAAAA04950.20 AA04
1671nxr-m14_B_G3_G4AAAAA04930.22 AA04
1681nxr-m15_B_G3_G4AAAAA04930.22 AA04
1691nxr-m16_B_G3_G4AAAAA04910.24 AA04
1701nxr-m17_B_G3_G4AAAAA04920.23 AA04
1711nxr-m18_B_G3_G4AAAAA04940.20 AA04
1721nxr-m1_B_G3_G4AAAAA04920.22 AA04
1731nxr-m2_B_G3_G4AAAAA04890.25 AA04
1741nxr-m3_B_G3_G4AAAAA04930.21 AA04
1751nxr-m4_B_G3_G4AAAAA04940.21 AA04
1761nxr-m5_B_G3_G4AAAAA04930.22 AA04
1771nxr-m6_B_G3_G4AAAAA04920.22 AA04
1781nxr-m7_B_G3_G4AAAAA04930.20 AA04
1791nxr-m8_B_G3_G4AAAAA04940.20 AA04
1801nxr-m9_B_G3_G4AAAAA04940.18 AA04
1811nxr-m10_B_G4_A5AAAAA04930.23 AA04
1821nxr-m11_B_G4_A5AAAAA04900.23 AA04
1831nxr-m12_B_G4_A5AAAAA04920.22 AA04
1841nxr-m13_B_G4_A5AAAAA04930.22 AA04
1851nxr-m14_B_G4_A5AAAAA04930.22 AA04
1861nxr-m15_B_G4_A5AAAAA04920.22 AA04
1871nxr-m16_B_G4_A5AAAAA04930.22 AA04
1881nxr-m17_B_G4_A5AAAAA04930.21 AA04
1891nxr-m18_B_G4_A5AAAAA04930.23 AA04
1901nxr-m1_B_G4_A5AAAAA04930.21 AA04
1911nxr-m2_B_G4_A5AAAAA04930.21 AA04
1921nxr-m3_B_G4_A5AAAAA04940.21 AA04
1931nxr-m4_B_G4_A5AAAAA04930.21 AA04
1941nxr-m5_B_G4_A5AAAAA04930.22 AA04
1951nxr-m6_B_G4_A5AAAAA04930.21 AA04
1961nxr-m7_B_G4_A5AAAAA04930.21 AA04
1971nxr-m8_B_G4_A5AAAAA04910.23 AA04
1981nxr-m9_B_G4_A5AAAAA04930.21 AA04
1991nxr-m10_B_A5_C6AAAAA00570.25 AA00
2001nxr-m11_B_A5_C6AAAAA00550.24 AA00
2011nxr-m12_B_A5_C6AAAAA00520.23 AA00
2021nxr-m13_B_A5_C6AAAAA00500.23 AA00
2031nxr-m14_B_A5_C6AAAAA00500.23 AA00
2041nxr-m15_B_A5_C6AAAAA00570.24 AA00
2051nxr-m16_B_A5_C6AAAAA00560.24 AA00
2061nxr-m17_B_A5_C6AAAAA00490.23 AA00
2071nxr-m18_B_A5_C6AAAAA00570.24 AA00
2081nxr-m1_B_A5_C6AAAAA00600.23 AA00
2091nxr-m2_B_A5_C6AAAAA00520.23 AA00
2101nxr-m3_B_A5_C6AAAAA00580.24 AA00
2111nxr-m4_B_A5_C6AAAAA00560.25 AA00
2121nxr-m5_B_A5_C6AAAAA00570.25 AA00
2131nxr-m6_B_A5_C6AAAAA00600.24 AA00
2141nxr-m7_B_A5_C6AAAAA00520.23 AA00
2151nxr-m8_B_A5_C6AAAAA00570.24 AA00
2161nxr-m9_B_A5_C6AAAAA00580.23 AA00
2171nxr-m10_B_C6_U7AAAAA04760.23 AA04
2181nxr-m11_B_C6_U7AAAAA00370.28 AA00
2191nxr-m12_B_C6_U7AAAAA00420.28 AA00
2201nxr-m13_B_C6_U7AAAAA04850.20 AA04
2211nxr-m14_B_C6_U7AAAAA00420.28 AA00
2221nxr-m15_B_C6_U7AAAAA04860.21 AA04
2231nxr-m16_B_C6_U7AAAAA00430.29 AA00
2241nxr-m17_B_C6_U7AAAAA04850.21 AA04
2251nxr-m18_B_C6_U7AAAAA00420.29 AA00
2261nxr-m1_B_C6_U7AAAAA04850.21 AA04
2271nxr-m2_B_C6_U7AAAAA04850.21 AA04
2281nxr-m3_B_C6_U7AAAAA00450.28 AA00
2291nxr-m4_B_C6_U7AAAAA00490.26 AA00
2301nxr-m5_B_C6_U7AAAAA00370.27 AA00
2311nxr-m6_B_C6_U7AAAAA04850.20 AA04
2321nxr-m7_B_C6_U7AAAAA00460.27 AA00
2331nxr-m8_B_C6_U7AAAAA00430.28 AA00
2341nxr-m9_B_C6_U7AAAAA00400.29 AA00
2351nxr-m10_B_U7_G8AAAAA00640.21 AA00
2361nxr-m11_B_U7_G8AAAAA00660.22 AA00
2371nxr-m12_B_U7_G8AAAAA00610.21 AA00
2381nxr-m13_B_U7_G8AAAAA00660.21 AA00
2391nxr-m14_B_U7_G8AAAAA00610.21 AA00
2401nxr-m15_B_U7_G8AAAAA00610.21 AA00
2411nxr-m16_B_U7_G8AAAAA00600.21 AA00
2421nxr-m17_B_U7_G8AAAAA00660.21 AA00
2431nxr-m18_B_U7_G8AAAAA00600.21 AA00
2441nxr-m1_B_U7_G8AAAAA00610.21 AA00
2451nxr-m2_B_U7_G8AAAAA00630.21 AA00
2461nxr-m3_B_U7_G8AAAAA00610.21 AA00
2471nxr-m4_B_U7_G8AAAAA00650.21 AA00
2481nxr-m5_B_U7_G8AAAAA00660.21 AA00
2491nxr-m6_B_U7_G8AAAAA00670.21 AA00
2501nxr-m7_B_U7_G8AAAAA00660.21 AA00
2511nxr-m8_B_U7_G8AAAAA00650.21 AA00
2521nxr-m9_B_U7_G8AAAAA00600.21 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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