DNATCO v4.1: results

The Leadzyme Ribozyme Bound to Mg(H2O)6(II) and Sr(II) at 1.8 A resolution

Results of the assignment of 92 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1nuv_A_C18_G19	AAA	AA00	76	0.22	AA00
02	1nuv_A_G19_G20	AAA	AA00	90	0.17	AA00
03	1nuv_A_G20_A21	AAA	AA00	94	0.13	AA00
04	1nuv_A_A21_C22	AAA	AA00	87	0.30	AA00
05	1nuv_A_C22_C23	AAA	AA00	60	0.34	AA00
06	1nuv_A_C23_G24	NAN	NANT	0	1.32	OP29
07	1nuv_A_G24_A25	AAA	AA08	86	0.20	AA08
08	1nuv_A_A25_G.A26	SYN	AB2S	73	0.20	AB2S
09	1nuv_A_A25_G.B26	A-B	AB01	32	0.42	AB01
10	1nuv_A_G.A26_C27	OPN	OPS1	46	0.38	OPS1
11	1nuv_A_G.B26_C27	OPN	OP12	85	0.14	OP12
12	1nuv_A_C27_C28	AAA	AA00	87	0.14	AA00
13	1nuv_A_C28_A29	AAA	AA00	96	0.19	AA00
14	1nuv_A_A29_G30	AAA	AA00	88	0.17	AA00
15	1nuv_B_G39_C40	AAA	AA00	84	0.17	AA00
16	1nuv_B_C40_U41	AAA	AA00	91	0.17	AA00
17	1nuv_B_U41_G42	AAA	AA00	88	0.12	AA00
18	1nuv_B_G42_G43	AAA	AA00	76	0.15	AA00
19	1nuv_B_G43_G44	AAA	AA00	79	0.22	AA00
20	1nuv_B_G44_A45	AAA	AA00	63	0.38	AA00
21	1nuv_B_A45_G46	AAA	AA00	66	0.33	AA00
22	1nuv_B_G46_U47	AAA	AA00	71	0.23	AA00
23	1nuv_B_U47_C48	AAA	AA00	90	0.15	AA00
24	1nuv_B_C48_C49	AAA	AA00	93	0.12	AA00
25	1nuv_C_C18_G19	AAA	AA00	95	0.23	AA00
26	1nuv_C_G19_G20	AAA	AA00	79	0.22	AA00
27	1nuv_C_G20_A21	AAA	AA00	86	0.14	AA00
28	1nuv_C_A21_C22	AAw	AA01	65	0.19	AA01
29	1nuv_C_C22_C23	A-B	AB05	36	0.35	AB05
30	1nuv_C_C23_G24	OPN	OP13	36	0.56	OP13
31	1nuv_C_G24_A25	AAu	AA13	73	0.22	AA13
32	1nuv_C_A25_G26	SYN	AB2S	86	0.17	AB2S
33	1nuv_C_G26_C27	OPN	OPS1	76	0.23	OPS1
34	1nuv_C_C27_C28	AAA	AA00	55	0.26	AA00
35	1nuv_C_C28_A29	AAA	AA00	97	0.12	AA00
36	1nuv_C_A29_G30	AAA	AA00	91	0.14	AA00
37	1nuv_D_G39_C40	AAA	AA00	85	0.14	AA00
38	1nuv_D_C40_U41	AAA	AA00	95	0.13	AA00
39	1nuv_D_U41_G42	AAA	AA00	85	0.13	AA00
40	1nuv_D_G42_G43	AAw	AA01	88	0.14	AA01
41	1nuv_D_G43_G44	AAA	AA00	71	0.26	AA00
42	1nuv_D_G44_A45	AAA	AA00	64	0.32	AA00
43	1nuv_D_A45_G46	AAA	AA00	76	0.28	AA00
44	1nuv_D_G46_U47	AAA	AA00	75	0.21	AA00
45	1nuv_D_U47_C48	AAA	AA00	83	0.18	AA00
46	1nuv_D_C48_C49	AAA	AA00	80	0.21	AA00
47	1nuv_E_C18_G19	AAA	AA00	95	0.21	AA00
48	1nuv_E_G19_G20	AAA	AA00	80	0.21	AA00
49	1nuv_E_G20_A21	AAA	AA00	95	0.15	AA00
50	1nuv_E_A21_C22	AAw	AA01	90	0.14	AA01
51	1nuv_E_C22_C23	A-B	AB05	61	0.38	AB05
52	1nuv_E_C23_G24	OPN	OP13	46	0.48	OP13
53	1nuv_E_G24_A25	AAu	AA13	82	0.24	AA13
54	1nuv_E_A25_G26	SYN	AB2S	84	0.18	AB2S
55	1nuv_E_G26_C27	OPN	OPS1	74	0.24	OPS1
56	1nuv_E_C27_C28	AAA	AA00	59	0.25	AA00
57	1nuv_E_C28_A29	AAA	AA00	98	0.10	AA00
58	1nuv_E_A29_G30	AAA	AA00	90	0.15	AA00
59	1nuv_F_G39_C40	AAA	AA00	89	0.13	AA00
60	1nuv_F_C40_U41	AAA	AA00	94	0.14	AA00
61	1nuv_F_U41_G42	AAA	AA00	82	0.12	AA00
62	1nuv_F_G42_G43	AAw	AA01	81	0.16	AA01
63	1nuv_F_G43_G44	AAA	AA00	75	0.27	AA00
64	1nuv_F_G44_A45	AAA	AA00	69	0.29	AA00
65	1nuv_F_A45_G46	AAA	AA00	76	0.29	AA00
66	1nuv_F_G46_U47	AAA	AA00	77	0.21	AA00
67	1nuv_F_U47_C48	AAA	AA00	87	0.17	AA00
68	1nuv_F_C48_C49	AAA	AA00	78	0.21	AA00
69	1nuv_G_C18_G19	AAA	AA00	72	0.22	AA00
70	1nuv_G_G19_G20	AAA	AA00	91	0.16	AA00
71	1nuv_G_G20_A21	AAA	AA00	94	0.12	AA00
72	1nuv_G_A21_C22	AAA	AA00	88	0.28	AA00
73	1nuv_G_C22_C23	AAA	AA00	59	0.37	AA00
74	1nuv_G_C23_G24	NAN	NANT	0	1.30	OP29
75	1nuv_G_G24_A25	AAA	AA08	86	0.19	AA08
76	1nuv_G_A25_G.A26	SYN	AB2S	79	0.19	AB2S
77	1nuv_G_A25_G.B26	A-B	AB01	39	0.41	AB01
78	1nuv_G_G.A26_C27	OPN	OPS1	56	0.36	OPS1
79	1nuv_G_G.B26_C27	OPN	OP12	86	0.16	OP12
80	1nuv_G_C27_C28	AAA	AA00	84	0.15	AA00
81	1nuv_G_C28_A29	AAA	AA00	96	0.19	AA00
82	1nuv_G_A29_G30	AAA	AA00	89	0.15	AA00
83	1nuv_H_G39_C40	AAA	AA00	82	0.18	AA00
84	1nuv_H_C40_U41	AAA	AA00	91	0.16	AA00
85	1nuv_H_U41_G42	AAA	AA00	87	0.12	AA00
86	1nuv_H_G42_G43	AAA	AA00	73	0.15	AA00
87	1nuv_H_G43_G44	AAA	AA00	83	0.20	AA00
88	1nuv_H_G44_A45	AAA	AA00	59	0.40	AA00
89	1nuv_H_A45_G46	AAA	AA00	67	0.34	AA00
90	1nuv_H_G46_U47	AAA	AA00	75	0.22	AA00
91	1nuv_H_U47_C48	AAA	AA00	92	0.16	AA00
92	1nuv_H_C48_C49	AAA	AA00	91	0.14	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 92 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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