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Conformers: ABBIImiBZICOPNSYNN
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2.9 A crystal structure of Streptomycin RNA-aptamer complex

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011ntb_A_G1_G2AAAAA00170.37 AA00
021ntb_A_G2_A3AAAAA04770.22 AA04
031ntb_A_A3_U4AAAAA00880.15 AA00
041ntb_A_U4_C5AAAAA00880.18 AA00
051ntb_A_C5_G6ICLIC03780.26 IC03
061ntb_A_G6_C7NANNANT00.90 BB20
071ntb_A_C7_A8NANNANT01.36 BB03
081ntb_A_A8_U9NANNANT01.30 OP17
091ntb_A_U9_U10NANNANT01.79 OP21
101ntb_A_U10_U11NANNANT01.69 OP27
111ntb_A_U11_G12NANNANT01.02 ZZ02
121ntb_A_G12_G13NANNANT01.33 OP12
131ntb_A_G13_A14AAAAA08360.31 AA08
141ntb_A_A14_C15AAAAA00820.21 AA00
151ntb_A_C15_U16A-BAB05420.64 AB05
161ntb_A_U16_U17OPNOP22440.64 OP22
171ntb_A_U17_C18NANNANT00.77 ZZ1S
181ntb_A_C18_U19NANNANT00.76 OPS1
191ntb_A_U19_G20AAAAA00630.18 AA00
201ntb_A_G20_C21AAAAA00940.10 AA00
211ntb_A_C21_C22AAAAA00700.21 AA00
221ntb_B_C101_G102AAAAA08890.17 AA08
231ntb_B_G102_G103AAAAA08850.20 AA08
241ntb_B_G103_C104AAAAA08910.16 AA08
251ntb_B_C104_A105AAAAA00910.11 AA00
261ntb_B_A105_C106NANNANT00.65 AA06
271ntb_B_C106_C107NANNANT01.20 IC07
281ntb_B_C107_A108NANNANT00.84 OP22
291ntb_B_A108_C109NANNANT00.47 OP17
301ntb_B_C109_G110NANNANT00.45 OP06
311ntb_B_G110_G111AAAAA00170.36 AA00
321ntb_B_G111_U112NANNANT00.45 AA04
331ntb_B_U112_C113NANNANT00.36 AA04
341ntb_B_C113_G114AAAAA00570.35 AA00
351ntb_B_G114_G115AAAAA00690.27 AA00
361ntb_B_G115_A116AAAAA00890.16 AA00
371ntb_B_A116_U117NANNANT00.29 AA08
381ntb_B_U117_C118NANNANT00.34 AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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